AT5G59480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.573 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G02230.2); Has 2253 Blast hits to 2250 proteins in 467 species: Archae - 3; Bacteria - 705; Metazoa - 0; Fungi - 141; Plants - 199; Viruses - 0; Other Eukaryotes - 1205 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23979619..23981156 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32105.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.88 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||
| Length | 282 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAYEEHFQQT SEAKYDCLLF DIDDTLYPLS SGLAMEVKKN IQEYMVQKLG IEEDKVQELC LSLYKIYGTT MAGLKAVGYD FDYDDFHRFV HGRLPYSTLK 101: PDPILRNIIL SLPIRKVVFT NADKAHAAKI IARLGLEGCF EKIISFETLN PITKTESPVD TKTREIFDII SYMANPDSSI ELPKTSVVCK PSEGAFEQVF 201: KMANINPKKT LFFDDSIRNI QTGKRVGLHT VWVGTSHREE GVDIALEHIH NIREALPQLW DAVDDKAKEI RTRQKVAIET IA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)