suba logo
AT5G59420.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : OSBP(oxysterol binding protein)-related protein 3C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
OSBP(oxysterol binding protein)-related protein 3C (ORP3C); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein, conserved site (InterPro:IPR018494), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 3B (TAIR:AT3G09300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:836061eggNOG:ENOG410XP9EeggNOG:KOG1737EMBL:AB025604EMBL:AY054473EMBL:BT000115EMBL:CP002688
EnsemblPlants:AT5G59420EnsemblPlants:AT5G59420.1entrez:836061GeneID:836061Genevisible:Q93Y40GO:GO:0005829GO:GO:0006869
GO:GO:0008289Gramene:AT5G59420.1hmmpanther:PTHR10972HOGENOM:HOG000239955InParanoid:Q93Y40InterPro:IPR000648InterPro:IPR018494
KEGG:ath:AT5G59420OMA:TRETKGQPANTHER:PTHR10972PaxDb:Q93Y40Pfam:PF01237Pfam:Q93Y40PhylomeDB:Q93Y40
PRIDE:Q93Y40PRO:PR:Q93Y40PROSITE:PS01013ProteinModelPortal:Q93Y40Proteomes:UP000006548RefSeq:NP_200750.1scanprosite:PS01013
SMR:Q93Y40STRING:3702.AT5G59420.1SUPFAM:0051579TAIR:AT5G59420tair10-symbols:ORP3CUniGene:At.24458UniProt:Q93Y40
Coordinates (TAIR10) chr5:+:23961731..23964623
Molecular Weight (calculated) 51968.90 Da
IEP (calculated) 4.95
GRAVY (calculated) -0.65
Length 457 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSPKKNENK GFFAAMTSGF SMFGTAVSRS VNGVQGNEGV EVINPEGGKE DAEEEAQKGR WKDEERDSYW KMMQKYIGSD ITSMVTLPVV IFEPMTMLQK
101: MAEIMEYSHL LDQADECEDP YLRLVYASSW AISVYYAFQR TWKPFNPILG ETYEMVNHGG ISFISEQVSH HPPMSAGHAE NEHFIYDITS KLKTKLLGNS
201: VDVYPVGRTR VTLKKDGVVL DLVPPLTKIH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYSA AEEPKIMMTG KWNEKMSYQP
301: CDAEGEPLPG TELKEVWHLA DVPKNDNFQY THFAHKINSF DTAPAKLLAS DSRIRPDRYS LEQGDLSKAG SEKHSLEERQ RAEKRTRETK GQKFTPRWFD
401: LTDEITPTPW GDIEVYQYNG KYNEHRDTAE SSSSASNETD LKSIEFNPWQ YGNISTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)