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AT5G59360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWEEeggNOG:ENOG411050FEMBL:AB025604EMBL:AY954877
EMBL:CP002688EMBL:DQ132758EnsemblPlants:AT5G59360EnsemblPlants:AT5G59360.1
entrez:836055GeneID:836055Gramene:AT5G59360.1hmmpanther:PTHR33142
hmmpanther:PTHR33142:SF6HOGENOM:HOG000153098KEGG:ath:AT5G59360OMA:AREVESM
Proteomes:UP000006548RefSeq:NP_200744.1TAIR:AT5G59360UniGene:At.64312
UniProt:Q9LTJ2
Coordinates (TAIR10) chr5:-:23945595..23946059
Molecular Weight (calculated) 18004.40 Da
IEP (calculated) 10.37
GRAVY (calculated) -1.16
Length 154 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKIKIFHLF PDDKDIEATQ QPESLLVPSK SDSLDSSLSR HHQENQSNRQ RNHQHRQQDQ ELENLQDGSR GKRKWECKDE ESPVKIPETP RNSNSVCYCP
101: PRPPRKPKAI PSMKRRGMWV KRSVVFLDVA REVESMFPPS VLQDFGKKIK KARF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)