suba logo
AT5G59140.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BTB/POZ domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB/POZ domain-containing protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41123WReggNOG:KOG3473EMBL:AB016890EMBL:AY045995EMBL:AY096614EMBL:CP002688EnsemblPlants:AT5G59140
EnsemblPlants:AT5G59140.1entrez:836032GeneID:836032GO:GO:0005829GO:GO:0006511Gramene:AT5G59140.1hmmpanther:PTHR20648
HOGENOM:HOG000216525IntAct:Q9FIG0InterPro:IPR001232InterPro:IPR011333InterPro:IPR016073KEGG:ath:AT5G59140KO:K03872
OMA:DMDIPVEPfam:PF03931PhylomeDB:Q9FIG0Proteomes:UP000006548RefSeq:NP_568900.1SMART:SM00512SMR:Q9FIG0
STRING:3702.AT5G59140.1SUPFAM:SSF54695TAIR:AT5G59140UniGene:At.6930unipathway:UPA00143UniProt:Q9FIG0
Coordinates (TAIR10) chr5:-:23874696..23875631
Molecular Weight (calculated) 11054.30 Da
IEP (calculated) 4.47
GRAVY (calculated) -0.09
Length 96 amino acids
Sequence (TAIR10)
(BLAST)
1: MRETVKLISM EGFEFVIDRE AAMVSQTIRS MLTSPGGFSE SKDGVVTFPD ISTTILEKIC QYFYWSLQYS RGKETEFHIE PELTLELMMA ANYLHT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)