AT5G58960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.754 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF641) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Mutant plants display impaired light-regulation of the hypocotyl randomization response. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GRAVITROPIC IN THE LIGHT (GIL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT2G45260.1); Has 300 Blast hits to 298 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 2; Plants - 280; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23805799..23808360 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62846.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.46 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||
| Length | 559 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLPGILLCSL NPRNHSKKKK SERESLETEP KDIDYWYSVQ FNRDPPRFAL KSENNNHHSR SKSGGDFCKK KKRGEMANKV SNFSDLIQRV TASCLLHPLS 101: AGRQDLAVNR REEYDTEEEE NEEEGEIQYE DALEKENGKD ETIRAKNGRN GVSVETVQEM EMVMDEVFTA AAAMKRAYVA LQEAHSPWDP EKMHDADMAM 201: VAELRRIGSL RERFRRMRGT GSGGRRKNDA GRGMLREAVA PYEAVVKELK KEVKVKDTEI ENLKEKVKVA SMANGNGGKK HRLLSSRKVN CTTQIAVSPV 301: PELFEMTMIQ VKEASKSFTG ILLSLMRAAH WDIAAAVRSI EAASASSDGM SASSFASSVQ SSVPNQHAKF ALESYICRKI FQGFDHETFY MDGSLSSLIN 401: PDQYRRDCFA QFKDMKAMDP MELLGILPTC HFGKFCSKKY LSIIHQKMEE SLFGDSEQRE LVVAGNHPRS QFYGEFLGLA KAVWLLHLLA FSLDPSPSHF 501: EANRGAEFHS QYMESVVRFS DGRVPAGQVV GFPVCPGFKL SHQGKGSIIK SRVYLVPRA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)