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AT5G58960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.909
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF641)
Curator
Summary (TAIR10)
Mutant plants display impaired light-regulation of the hypocotyl randomization response.
Computational
Description (TAIR10)
GRAVITROPIC IN THE LIGHT (GIL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT2G45260.1); Has 300 Blast hits to 298 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 2; Plants - 280; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIWZeggNOG:ENOG410YCXFEMBL:CP002688EnsemblPlants:AT5G58960EnsemblPlants:AT5G58960.1entrez:836013ExpressionAtlas:F4KGE8
GeneID:836013GO:GO:0009639GO:GO:0009959Gramene:AT5G58960.1hmmpanther:PTHR31161hmmpanther:PTHR31161:SF4InParanoid:F4KGE8
InterPro:IPR006943ncoils:CoilOMA:GAHCPWDPaxDb:F4KGE8Pfam:PF04859PRIDE:F4KGE8Proteomes:UP000006548
RefSeq:NP_851217.1STRING:3702.AT5G58960.1TAIR:AT5G58960tair10-symbols:GIL1UniGene:At.29251UniProt:F4KGE8
Coordinates (TAIR10) chr5:+:23805799..23808360
Molecular Weight (calculated) 62846.00 Da
IEP (calculated) 8.46
GRAVY (calculated) -0.54
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MLPGILLCSL NPRNHSKKKK SERESLETEP KDIDYWYSVQ FNRDPPRFAL KSENNNHHSR SKSGGDFCKK KKRGEMANKV SNFSDLIQRV TASCLLHPLS
101: AGRQDLAVNR REEYDTEEEE NEEEGEIQYE DALEKENGKD ETIRAKNGRN GVSVETVQEM EMVMDEVFTA AAAMKRAYVA LQEAHSPWDP EKMHDADMAM
201: VAELRRIGSL RERFRRMRGT GSGGRRKNDA GRGMLREAVA PYEAVVKELK KEVKVKDTEI ENLKEKVKVA SMANGNGGKK HRLLSSRKVN CTTQIAVSPV
301: PELFEMTMIQ VKEASKSFTG ILLSLMRAAH WDIAAAVRSI EAASASSDGM SASSFASSVQ SSVPNQHAKF ALESYICRKI FQGFDHETFY MDGSLSSLIN
401: PDQYRRDCFA QFKDMKAMDP MELLGILPTC HFGKFCSKKY LSIIHQKMEE SLFGDSEQRE LVVAGNHPRS QFYGEFLGLA KAVWLLHLLA FSLDPSPSHF
501: EANRGAEFHS QYMESVVRFS DGRVPAGQVV GFPVCPGFKL SHQGKGSIIK SRVYLVPRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)