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AT5G58890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 82
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 82 (AGL82); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G55690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB016885EMBL:AB493798EMBL:CP002688EnsemblPlants:AT5G58890EnsemblPlants:AT5G58890.1
entrez:836006GeneID:836006GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT5G58890.1
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF176HOGENOM:HOG000152489IntAct:Q9FIM0InterPro:IPR002100KEGG:ath:AT5G58890OMA:ANDKTRI
PaxDb:Q9FIM0Pfam:PF00319Pfscan:PS50066PhylomeDB:Q9FIM0PRINTS:PR00404PROSITE:PS50066ProteinModelPortal:Q9FIM0
Proteomes:UP000006548RefSeq:NP_200697.1SMART:SM00432SMR:Q9FIM0STRING:3702.AT5G58890.1SUPFAM:SSF55455TAIR:AT5G58890
tair10-symbols:AGL82UniGene:At.55618UniProt:Q9FIM0
Coordinates (TAIR10) chr5:+:23780832..23781716
Molecular Weight (calculated) 34167.70 Da
IEP (calculated) 9.27
GRAVY (calculated) -0.76
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPKVVDLQR IANDKTRITT YKKRKASLYK KAQEFSTLCG VETCLIVYGP TKATDVVISE PEIWPKDETK VRAIIRKYKD TVSTSCRKET NVETFVNDVG
101: KGNEVVTKKR VKRENKYSSW EEKLDKCSRE QLHGIFCAVD SKLNEAVTRQ ERSMFRVNHQ AMDTPFPQNL MDQQFMPQYF HEQPQFQGFP NNFNNMGFSL
201: ISPHDGQIQM DPNLMEKWTD LALTQSLMMS KGNDGTQFMQ RQEQPYYNRE QVVSRSAGFN VNPFMGYQVP FNIPNWRLSG NQVENWELSG KKTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)