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AT5G58870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FTSH protease 9
Curator
Summary (TAIR10)
encodes an FtsH protease that is localized to the chloroplast
Computational
Description (TAIR10)
FTSH protease 9 (ftsh9); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 7 (TAIR:AT3G47060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BRENDA:3.4.24.B20EC:3.4.24.-eggNOG:COG0465eggNOG:KOG0731EMBL:AB016885EMBL:AY059856EMBL:CP002688
EnsemblPlants:AT5G58870EnsemblPlants:AT5G58870.1entrez:836004Gene3D:3.40.50.300GeneID:836004Genevisible:Q9FIM2GO:GO:0004176
GO:GO:0004222GO:GO:0005524GO:GO:0005739GO:GO:0006508GO:GO:0008237GO:GO:0008270GO:GO:0009507
GO:GO:0009535GO:GO:0009941GO:GO:0016021Gramene:AT5G58870.1HAMAP:MF_01458hmmpanther:PTHR23076hmmpanther:PTHR23076:SF70
HOGENOM:HOG000217276InParanoid:Q9FIM2InterPro:IPR000642InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960InterPro:IPR005936
InterPro:IPR011546InterPro:IPR027417KEGG:ath:AT5G58870KO:K03798MEROPS:M41.A03OMA:MGNDEREPaxDb:Q9FIM2
Pfam:PF00004Pfam:PF01434Pfam:PF06480Pfam:Q9FIM2PhylomeDB:Q9FIM2PRIDE:Q9FIM2PRO:PR:Q9FIM2
PROSITE:PS00674ProteinModelPortal:Q9FIM2Proteomes:UP000006548RefSeq:NP_568892.1scanprosite:PS00674SMART:SM00382SMR:Q9FIM2
STRING:3702.AT5G58870.1SUPFAM:SSF140990SUPFAM:SSF52540TAIR:AT5G58870tair10-symbols:ftsh9TIGRfam:TIGR01241TIGRFAMs:TIGR01241
UniGene:At.7754UniProt:Q9FIM2
Coordinates (TAIR10) chr5:-:23770080..23773719
Molecular Weight (calculated) 87842.80 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.25
Length 806 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSIELLSPL IHDKFRFSTC CSTSSLLYLH ASSFFRDRSF GFRQNPNRFV SNSSIQLPQS VPGSINQERF NLWQGFSRKK STSSSRTIVN CQEGDQKASS
101: SEGEGKTNKD KGRKQGKNEL WWSKGKKWQW KPIIQAQEIG VMLLQLGIVM FVVRLLRPGI PLPGSEPRTQ TTFMSVPYSD FLSKVNNDEV QKVEVDGFHV
201: LFKLKDDGNL QESETSSSSI KLSESSETML RSVAPTKRVV YSTTRPRDIK TPYEKMLENN VEFGSPDKRS GGFFNSGLIV LFYIAVLAGL LHRFPVNFSQ
301: STTGQLRTRK SGGPGGGKVS GDGETITFAD VAGVDEAKEE LEEIVEFLKN PDRYVRLGAR PPRGVLLVGL PGTGKTLLAK AVAGESDVPF ISCSASEFVE
401: LYVGMGASRV RDLFARAKKE APSIIFIDEI DAVAKSRDGK FRMVSNDERE QTLNQLLTEM DGFDSSSAVI VLGATNRADV LDPALRRPGR FDRVVTVESP
501: DKVGRESILK VHVSKKELPL GDDVNLASIA SMTTGFTGAD LANLVNEAAL LAGRKSKMTV DKIDFIHAVE RSIAGIEKKT ARLKGSEKAV VARHEAGHAV
601: VGTAVASLLS GQSRVEKLSI LPRSGGALGF TYIPPTHEDR YLLFIDELHG RLVTLLGGRA AEEVVYSGRI STGALDDIRR ATDMAYKAVA EYGLNEKIGP
701: VSVATLSAGG IDDSGGSPWG RDQGHLVDLV QREVTNLLQS ALDVALTVVR ANPDVLEGLG AQLEDEEKVE GEELQKWLNR VVPSEELAVF IKGKQTALLP
801: AQASSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)