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AT5G58720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : smr (Small MutS Related) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
smr (Small MutS Related) domain-containing protein; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41101K4eggNOG:KOG2401EMBL:AB020755EMBL:AJ006021EMBL:AY062752EMBL:AY085409EMBL:AY114674
EMBL:CP002688EnsemblPlants:AT5G58720EnsemblPlants:AT5G58720.1entrez:835986ExpressionAtlas:O65573GeneID:835986Genevisible:O65573
hmmpanther:PTHR13308hmmpanther:PTHR13308:SF22HOGENOM:HOG000064626IntAct:O65573InterPro:IPR002625InterPro:IPR013899OMA:PSSMDWK
PaxDb:O65573Pfam:PF08590Pfscan:PS50828PhylomeDB:O65573PIR:T51367PROSITE:PS50828ProteinModelPortal:O65573
Proteomes:UP000006548RefSeq:NP_200680.1SMART:SM00463SMART:SM01162STRING:3702.AT5G58720.1SUPFAM:0053808SUPFAM:SSF160443
TAIR:AT5G58720UniGene:At.49190UniGene:At.7874UniProt:O65573
Coordinates (TAIR10) chr5:-:23719976..23722974
Molecular Weight (calculated) 56657.10 Da
IEP (calculated) 5.62
GRAVY (calculated) -0.66
Length 519 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)