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AT5G58620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.971
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger (CCCH-type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (CCCH-type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G40140.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21220eggNOG:ENOG410XR0ZeggNOG:KOG1595EMBL:AB020755EMBL:AY054176EMBL:AY062491EMBL:AY103314
EMBL:BT002083EMBL:CP002688EnsemblPlants:AT5G58620EnsemblPlants:AT5G58620.1entrez:835976Gene3D:1.25.40.20GeneID:835976
Genevisible:Q9LUZ4GO:GO:0003677GO:GO:0003700GO:GO:0006355GO:GO:0046872Gramene:AT5G58620.1hmmpanther:PTHR14493
hmmpanther:PTHR14493:SF54HOGENOM:HOG000240339InParanoid:Q9LUZ4IntAct:Q9LUZ4InterPro:IPR000571InterPro:IPR002110InterPro:IPR020683
iPTMnet:Q9LUZ4KEGG:ath:AT5G58620OMA:ESSACNDPaxDb:Q9LUZ4Pfam:PF00642Pfam:PF12796Pfam:PF13637
Pfam:Q9LUZ4Pfscan:PS50088Pfscan:PS50103Pfscan:PS50297PhylomeDB:Q9LUZ4PRIDE:Q9LUZ4PRO:PR:Q9LUZ4
PROSITE:PS50088PROSITE:PS50103PROSITE:PS50297ProteinModelPortal:Q9LUZ4Proteomes:UP000006548RefSeq:NP_200670.1SMART:SM00248
SMART:SM00356SMR:Q9LUZ4STRING:3702.AT5G58620.1SUPFAM:SSF48403TAIR:AT5G58620UniGene:At.49189UniGene:At.68520
UniProt:Q9LUZ4
Coordinates (TAIR10) chr5:+:23693959..23695782
Molecular Weight (calculated) 66451.10 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.46
Length 607 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVDELSHLK FSLLLESSAC NDLSGFKSLV EEEGLESIDG SGLWYGRRLG SKKMGFEERT PLMIAALFGS KEVVDYIIST GLVDVNRSCG SDGATALHCA
101: VSGLSANSLE IVTLLLKGSA NPDSCDAYGN KPGDVIFPCL SPVFSARMKV LERLLKGNDD LNEVNGQEES EPEVEVEVEV SPPRGSERKE YPVDPTLPDI
201: KNGVYGTDEF RMYAFKIKPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GSCSRGDTCE YAHGIFECWL HPAQYRTRLC KDETNCSRRV
301: CFFAHKPEEL RPLYPSTGSG VPSPRSSFSS CNSSTAFDMG PISPLPIGAT TTPPLSPNGV SSPIGGGKTW MNWPNITPPA LQLPGSRLKS ALNAREIDFS
401: EEMQSLTSPT TWNNTPMSSP FSGKGMNRLA GGAMSPVNSL SDMFGTEDNT SGLQIRRSVI NPQLHSNSLS SSPVGANSLF SMDSSAVLAS RAAEFAKQRS
501: QSFIERNNGL NHHPAISSMT TTCLNDWGSL DGKLDWSVQG DELQKLRKST SFRLRAGGME SRLPNEGTGL EEPDVSWVEP LVKEPQETRL APVWMEQSYM
601: ETEQTVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)