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AT5G58600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF828)
Curator
Summary (TAIR10)
Belongs to a large family of plant-specific genes of unknown function. Involved in resistance to the powdery mildew species Erysiphe cichoracearum and Erysiphe orontii, but not to the unrelated pathogens Pseudomonas syringae or Peronospora parasitica. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
POWDERY MILDEW RESISTANT 5 (PMR5); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 45 (TAIR:AT2G30010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVKTeggNOG:ENOG410YF78EMBL:AB020755EMBL:AK117382EMBL:AY085512EMBL:BT005096EMBL:CP002688
EnsemblPlants:AT5G58600EnsemblPlants:AT5G58600.1EnsemblPlants:AT5G58600.2entrez:835974ExpressionAtlas:Q9LUZ6GeneID:835974Genevisible:Q9LUZ6
GO:GO:0005783GO:GO:0005794GO:GO:0006952GO:GO:0009620GO:GO:0016021GO:GO:0016413GO:GO:0071554
gramene_pathway:2.4.1.-gramene_pathway:PWY-2881gramene_pathway:PWY-2901hmmpanther:PTHR32285hmmpanther:PTHR32285:SF14HOGENOM:HOG000238066InParanoid:Q9LUZ6
InterPro:IPR025846InterPro:IPR026057InterPro:IPR029962InterPro:IPR029981KEGG:ath:AT5G58600OMA:YTGYNCPPANTHER:PTHR32285
PANTHER:PTHR32285:SF14PaxDb:Q9LUZ6Pfam:PF13839Pfam:PF14416Pfam:Q9LUZ6PhylomeDB:Q9LUZ6PRIDE:Q9LUZ6
PRO:PR:Q9LUZ6Proteomes:UP000006548RefSeq:NP_200668.1RefSeq:NP_974961.1STRING:3702.AT5G58600.1TAIR:AT5G58600tair10-symbols:PMR5
tair10-symbols:TBL44UniGene:At.27521UniProt:Q9LUZ6
Coordinates (TAIR10) chr5:-:23683944..23685679
Molecular Weight (calculated) 44835.00 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.25
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSLLPLLGI SVVSAIFFLV LQQPEQSSSA IILSLKKRHG SSSGSSGNQY SSSRPSAGFQ GNRSTCSLFL GTWVRDNSYP LYKPADCPGV VEPEFDCQMY
101: GRPDSDYLKY RWQPQNCNLP TFNGAQFLLK MKGKTIMFAG DSLGKNQWES LICLIVSSAP STRTEMTRGL PLSTFRFLDY GITMSFYKAP FLVDIDAVQG
201: KRVLKLDEIS GNANAWHDAD LLIFNTGHWW SHTGSMQGWD LIQSGNSYYQ DMDRFVAMEK ALRTWAYWVE THVDRSRTQV LFLSISPTHD NPSDWAASSS
301: SGSKNCYGET EPITGTAYPV SSYTDQLRSV IVEVLHGMHN PAFLLDITLL SSLRKDGHPS VYSGLISGSQ RSRPDQSADC SHWCLPGLPD TWNQLLYTLL
401: IY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)