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AT5G58590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.669
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAN binding protein 1
Curator
Summary (TAIR10)
Encodes a Ran-binding protein 1 homolog (RanBP1).
Computational
Description (TAIR10)
RAN binding protein 1 (RANBP1); FUNCTIONS IN: protein binding; INVOLVED IN: protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT2G30060.1); Has 1560 Blast hits to 1231 proteins in 240 species: Archae - 0; Bacteria - 8; Metazoa - 836; Fungi - 365; Plants - 158; Viruses - 15; Other Eukaryotes - 178 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5171eggNOG:KOG0864EMBL:AB020755EMBL:CP002688EMBL:U62742EnsemblPlants:AT5G58590EnsemblPlants:AT5G58590.1
entrez:835973ExpressionAtlas:P92985Gene3D:2.30.29.30GeneID:835973Genevisible:P92985GO:GO:0000060GO:GO:0005643
GO:GO:0051028Gramene:AT5G58590.1hmmpanther:PTHR23138hmmpanther:PTHR23138:SF93HOGENOM:HOG000176323InParanoid:P92985InterPro:IPR000156
InterPro:IPR011993iPTMnet:P92985KEGG:ath:AT5G58590KO:K15306ncoils:CoilOMA:SCLWHATPaxDb:P92985
Pfam:P92985Pfam:PF00638Pfscan:PS50196PhylomeDB:P92985PRIDE:P92985PRO:PR:P92985PROSITE:PS50196
ProteinModelPortal:P92985Proteomes:UP000006548RefSeq:NP_200667.2SMART:SM00160SMR:P92985STRING:3702.AT5G58590.1SUPFAM:SSF50729
TAIR:AT5G58590tair10-symbols:RANBP1UniGene:At.7865UniProt:P92985UniProt:Q1WWI2
Coordinates (TAIR10) chr5:-:23680319..23681714
Molecular Weight (calculated) 24723.60 Da
IEP (calculated) 4.40
GRAVY (calculated) -0.99
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)