AT5G58510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.984 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23648287..23654421 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108910.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||
| Length | 963 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASVSKSNHL EEDDDAEEEV QHFDDFTLAS SWERFISDIE ATCRQWLADG PKNLVEKGAV AVEDSKNLFT VKHELKNVAK SYCMEFYFQI DNNGSQQAGI 101: GNWNSNSHDL QLCFGVKDFL LIAPQSASGV LLDTPESSKL LSAVAIALSN CGSLWPAFVP VHDPSRKAYI GIQNMGTVFT RRFEADRVGS QVPVKLMHLE 201: GLYELFVSKF VYSGVDFSMH TFRVHFMMRL TYQTFPYDEE DEEIDTDEVM GDKSDTAEHY GSESRNKVLW DDDCPWSEWY SAEDPLRGFE LVVTWADRTV 301: ESTLEMAELE NASPHDAEKW ILHPILSPYL GDPSHGKRID FASQLLCLVE ALDSSFSAQF MEDFVSVENP SSENLKTSVV IPPPSVLDRV IKDLFREGSK 401: LPDFTKGEHR LSRALKAAPL ESLFTQFCLH SLWFGNCNIR AIAFLWIEFV REVRWCWEET QPLPKMPIDG SIDLSSCLIN QKLHLLAICI EKKREMNEEF 501: LDCIGSDDSS DASVSMEEHH KVDKRRNTSS EEELRRKRDS SIAEDTSKQL RFERKTERTN SVNQSPTDAI RRGSAGPVGT MMLLKSRQQL HAPFTQDPPL 601: MTEDMHEERL QAVEAFGDSL NVPGQLEKDI LLSDMSAFKA ANPDAVFEDF IRWHSPGDWE SFEPKTTEPS AGPSTEGSKD EWPPRGRLSQ RMSDQGNLWR 701: KSWNDAPALP ADDQKPLLDP NREGEKIVHY LETVRPHQLL EQMVCTAFRG SADTLNQTNV GNMRQMTSKL EQLYLIMKFT LGALQRNNLP DKAKTVKDLK 801: RLCMVFENVE KLVAVAASIH RKFLDASRLA QVIFSDFYGV YAPTMGMSAN DEENKSRTEM EVSRQEVSLR ERQVVSNLFS PPSANQSWRK VLSMGNLLNG 901: HEPILREIIF STGDDVNNGI HYAAAADVAA TSDRKGEEIE THRMYVSGTS NDLRVGLSVT SCD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)