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AT5G58510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y2R4eggNOG:KOG2390EMBL:AY091055EMBL:AY117361EMBL:CP002688EnsemblPlants:AT5G58510EnsemblPlants:AT5G58510.1
entrez:835964GeneID:835964GO:GO:0005096GO:GO:0009507Gramene:AT5G58510.1hmmpanther:PTHR21422hmmpanther:PTHR21422:SF3
HOGENOM:HOG000029929InterPro:IPR026147KEGG:ath:AT5G58510KO:K18270OMA:HMLAICIPANTHER:PTHR21422Pfam:PF13890
PhylomeDB:Q8RWW8Proteomes:UP000006548RefSeq:NP_200659.2STRING:3702.AT5G58510.1TAIR:AT5G58510UniGene:At.29276UniProt:Q8RWW8
Coordinates (TAIR10) chr5:-:23648287..23654421
Molecular Weight (calculated) 108910.00 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.47
Length 963 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVSKSNHL EEDDDAEEEV QHFDDFTLAS SWERFISDIE ATCRQWLADG PKNLVEKGAV AVEDSKNLFT VKHELKNVAK SYCMEFYFQI DNNGSQQAGI
101: GNWNSNSHDL QLCFGVKDFL LIAPQSASGV LLDTPESSKL LSAVAIALSN CGSLWPAFVP VHDPSRKAYI GIQNMGTVFT RRFEADRVGS QVPVKLMHLE
201: GLYELFVSKF VYSGVDFSMH TFRVHFMMRL TYQTFPYDEE DEEIDTDEVM GDKSDTAEHY GSESRNKVLW DDDCPWSEWY SAEDPLRGFE LVVTWADRTV
301: ESTLEMAELE NASPHDAEKW ILHPILSPYL GDPSHGKRID FASQLLCLVE ALDSSFSAQF MEDFVSVENP SSENLKTSVV IPPPSVLDRV IKDLFREGSK
401: LPDFTKGEHR LSRALKAAPL ESLFTQFCLH SLWFGNCNIR AIAFLWIEFV REVRWCWEET QPLPKMPIDG SIDLSSCLIN QKLHLLAICI EKKREMNEEF
501: LDCIGSDDSS DASVSMEEHH KVDKRRNTSS EEELRRKRDS SIAEDTSKQL RFERKTERTN SVNQSPTDAI RRGSAGPVGT MMLLKSRQQL HAPFTQDPPL
601: MTEDMHEERL QAVEAFGDSL NVPGQLEKDI LLSDMSAFKA ANPDAVFEDF IRWHSPGDWE SFEPKTTEPS AGPSTEGSKD EWPPRGRLSQ RMSDQGNLWR
701: KSWNDAPALP ADDQKPLLDP NREGEKIVHY LETVRPHQLL EQMVCTAFRG SADTLNQTNV GNMRQMTSKL EQLYLIMKFT LGALQRNNLP DKAKTVKDLK
801: RLCMVFENVE KLVAVAASIH RKFLDASRLA QVIFSDFYGV YAPTMGMSAN DEENKSRTEM EVSRQEVSLR ERQVVSNLFS PPSANQSWRK VLSMGNLLNG
901: HEPILREIIF STGDDVNNGI HYAAAADVAA TSDRKGEEIE THRMYVSGTS NDLRVGLSVT SCD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)