suba logo
AT5G58440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19796370 (2010): Golgi trans-Golgi network
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sorting nexin 2A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sorting nexin 2A (SNX2a); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: sorting nexin 2B (TAIR:AT5G07120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5391eggNOG:KOG2273EMBL:AB025632EMBL:AY099775
EMBL:BT000285EMBL:CP002688EnsemblPlants:AT5G58440EnsemblPlants:AT5G58440.1
entrez:835957Gene3D:3.30.1520.10GeneID:835957Genevisible:Q8L5Z7
GO:GO:0005794GO:GO:0005829GO:GO:0006897GO:GO:0015031
GO:GO:0016050GO:GO:0019898GO:GO:0030904GO:GO:0032502
GO:GO:0032585GO:GO:0035091GO:GO:0043621GO:GO:0051604
GO:GO:0090351Gramene:AT5G58440.1hmmpanther:PTHR10555hmmpanther:PTHR10555:SF155
HOGENOM:HOG000241367InParanoid:Q8L5Z7IntAct:Q8L5Z7InterPro:IPR001683
InterPro:IPR015404iPTMnet:Q8L5Z7KEGG:ath:AT5G58440ncoils:Coil
OMA:ERRADFMPaxDb:Q8L5Z7Pfam:PF00787Pfam:PF09325
Pfam:Q8L5Z7Pfscan:PS50195PhylomeDB:Q8L5Z7PRIDE:Q8L5Z7
PRO:PR:Q8L5Z7PROSITE:PS50195ProteinModelPortal:Q8L5Z7Proteomes:UP000006548
RefSeq:NP_200652.2SMART:SM00312SMR:Q8L5Z7STRING:3702.AT5G58440.1
SUPFAM:SSF64268TAIR:AT5G58440tair10-symbols:SNX2aUniGene:At.29281
UniProt:Q8L5Z7
Coordinates (TAIR10) chr5:-:23624154..23626676
Molecular Weight (calculated) 65531.00 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.63
Length 587 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)