suba logo
AT5G58430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : exocyst subunit exo70 family protein B1
Curator
Summary (TAIR10)
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational
Description (TAIR10)
exocyst subunit exo70 family protein B1 (EXO70B1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein B2 (TAIR:AT1G07000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21200eggNOG:ENOG410YIGIeggNOG:KOG2344EMBL:AB025632
EMBL:AY094480EMBL:BT000827EMBL:CP002688EnsemblPlants:AT5G58430
EnsemblPlants:AT5G58430.1entrez:835956GeneID:835956Genevisible:Q9FGH9
GO:GO:0000145GO:GO:0005829GO:GO:0005886GO:GO:0006887
GO:GO:0045335GO:GO:0070062Gramene:AT5G58430.1hmmpanther:PTHR12542
hmmpanther:PTHR12542:SF29HOGENOM:HOG000238421InParanoid:Q9FGH9InterPro:IPR004140
InterPro:IPR016159KEGG:ath:AT5G58430OMA:MAWIMELPANTHER:PTHR12542
PaxDb:Q9FGH9Pfam:PF03081Pfam:Q9FGH9PhylomeDB:Q9FGH9
PRIDE:Q9FGH9PRO:PR:Q9FGH9ProteinModelPortal:Q9FGH9Proteomes:UP000006548
Reactome:R-ATH-5620916RefSeq:NP_200651.1SMR:Q9FGH9STRING:3702.AT5G58430.1
SUPFAM:SSF74788TAIR:AT5G58430tair10-symbols:ATEXO70B1tair10-symbols:EXO70B1
UniGene:At.21678UniProt:Q9FGH9
Coordinates (TAIR10) chr5:-:23621460..23623334
Molecular Weight (calculated) 70643.60 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.30
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MAENGEEKLL AVARHIAKTL GHNESMADDI LQIFSNFDGR FSREKLAEGQ AGEDGSGVAT LERALNSIDG QISRFVAADQ PIWADPADSA AFLDTIDELV
101: AIIREWSPMA SEKPIGICLT RADDMMQQAM FRIEEEFRSL MERGAESFGL NPQGDAGAMN HRFDSEEEED DDRDFNNGDD IQIPVAQPLT DYDLIIDALP
201: SATINDLHEM AKRMLGAGFG KACSHVYSSC RREFLEESMS RLGLQKLSIE EVHKMPWQEL EDEIDRWIKA ANVALRILFP SERRLCDRVF FGFSSAADLS
301: FMEVCRGSTI QLLNFADAIA IGSRSPERLF KVLDVFETMR DLMPEFESVF SDQFCSVLRN EAVTIWKRLG EAIRGIFMEL ENLIRRDPAK AAVPGGGLHP
401: ITRYVMNYLR AACRSRQTLE QVFEESNGVP SKDSTLLTVQ MSWIMELLES NLEVKSKVYK DPALCYVFLM NNGRYIVQKV KDGDLGLLLG DDWIRKHNVK
501: VKQYHMNYQR SSWNKMLGLL KVDNTAAGMN GLGKTMKEKL KQFNIQFDEI CKVHSTWVVF DEQLKEELKI SLARLLVPAY GSFIGRFQNL GDIGKNADKY
601: IKYGVEDIEA RINELFKGTT TGRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)