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AT5G58300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G08680.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G58300-MONOMERBioCyc:ARA:GQT-1675-MONOMERBioGrid:21186eggNOG:ENOG410IEGPeggNOG:ENOG4111F0SEMBL:AB019228EMBL:AY065009
EMBL:BT001138EMBL:CP002688EnsemblPlants:AT5G58300EnsemblPlants:AT5G58300.1EnsemblPlants:AT5G58300.2entrez:835942ExpressionAtlas:Q9LVM0
Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:835942Genevisible:Q9LVM0GO:GO:0004672GO:GO:0005524GO:GO:0005886
GO:GO:0016021Gramene:AT5G58300.1Gramene:AT5G58300.2hmmpanther:PTHR27008hmmpanther:PTHR27008:SF22HOGENOM:HOG000116554InParanoid:Q9LVM0
IntAct:Q9LVM0InterPro:IPR000719InterPro:IPR001611InterPro:IPR011009InterPro:IPR013210InterPro:IPR013320InterPro:IPR017441
InterPro:IPR032675iPTMnet:Q9LVM0KEGG:ath:AT5G58300OMA:DERPRMEPaxDb:Q9LVM0Pfam:PF00069Pfam:PF08263
Pfam:PF13855Pfam:Q9LVM0Pfscan:PS50011PhylomeDB:Q9LVM0PRIDE:Q9LVM0PRO:PR:Q9LVM0PROSITE:PS00107
PROSITE:PS50011ProteinModelPortal:Q9LVM0Proteomes:UP000006548RefSeq:NP_001119458.1RefSeq:NP_200638.1scanprosite:PS00107SMR:Q9LVM0
STRING:3702.AT5G58300.1SUPFAM:SSF52058SUPFAM:SSF56112SwissPalm:Q9LVM0TAIR:AT5G58300TMHMM:TMhelixUniGene:At.49186
UniGene:At.70285UniProt:C0LGW1UniProt:Q9LVM0
Coordinates (TAIR10) chr5:+:23572821..23574871
Molecular Weight (calculated) 71902.80 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.12
Length 654 amino acids
Sequence (TAIR10)
(BLAST)
001: MMQFHFQFYV GPVFTLRPSK GFLSTCLVSF LFVTTTFCSY AIADLNSDRQ ALLAFAASVP HLRRLNWNST NHICKSWVGV TCTSDGTSVH ALRLPGIGLL
101: GPIPPNTLGK LESLRILSLR SNLLSGNLPP DIHSLPSLDY IYLQHNNFSG EVPSFVSRQL NILDLSFNSF TGKIPATFQN LKQLTGLSLQ NNKLSGPVPN
201: LDTVSLRRLN LSNNHLNGSI PSALGGFPSS SFSGNTLLCG LPLQPCATSS PPPSLTPHIS TPPLPPFPHK EGSKRKLHVS TIIPIAAGGA ALLLLITVII
301: LCCCIKKKDK REDSIVKVKT LTEKAKQEFG SGVQEPEKNK LVFFNGCSYN FDLEDLLRAS AEVLGKGSYG TAYKAVLEES TTVVVKRLKE VAAGKREFEQ
401: QMEIISRVGN HPSVVPLRAY YYSKDEKLMV CDYYPAGNLS SLLHGNRGSE KTPLDWDSRV KITLSAAKGI AHLHAAGGPK FSHGNIKSSN VIMKQESDAC
501: ISDFGLTPLM AVPIAPMRGA GYRAPEVMET RKHTHKSDVY SFGVLILEML TGKSPVQSPS RDDMVDLPRW VQSVVREEWT SEVFDIELMR FQNIEEEMVQ
601: MLQIAMACVA QVPEVRPTMD DVVRMIEEIR VSDSETTRPS SDDNSKPKDS NVQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)