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AT5G58290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : regulatory particle triple-A ATPase 3
Curator
Summary (TAIR10)
26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,
Computational
Description (TAIR10)
regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21185BRENDA:3.6.4.8eggNOG:COG1222eggNOG:KOG0727
EMBL:AB019228EMBL:AF123392EMBL:AY070466EMBL:BT020373
EMBL:CP002688EnsemblPlants:AT5G58290EnsemblPlants:AT5G58290.1entrez:835941
Gene3D:3.40.50.300GeneID:835941Genevisible:Q9SEI4GO:GO:0000502
GO:GO:0005524GO:GO:0005618GO:GO:0005634GO:GO:0005829
GO:GO:0009506GO:GO:0016020GO:GO:0016787GO:GO:0030163
Gramene:AT5G58290.1hmmpanther:PTHR23073hmmpanther:PTHR23073:SF8HOGENOM:HOG000225143
IntAct:Q9SEI4InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960
InterPro:IPR005937InterPro:IPR027417iPTMnet:Q9SEI4KEGG:ath:AT5G58290
KO:K03063ncoils:CoilOMA:ICRTETHPaxDb:Q9SEI4
Pfam:PF00004Pfam:Q9SEI4PhylomeDB:Q9SEI4PRIDE:Q9SEI4
PRO:PR:Q9SEI4PROSITE:PS00674ProteinModelPortal:Q9SEI4Proteomes:UP000006548
Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425Reactome:R-ATH-5632684
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_200637.1
scanprosite:PS00674SMART:SM00382SMR:Q9SEI4STRING:3702.AT5G58290.1
SUPFAM:SSF52540TAIR:AT5G58290tair10-symbols:RPT3TIGRfam:TIGR01242
TIGRFAMs:TIGR01242UniGene:At.45955UniProt:Q9SEI4
Coordinates (TAIR10) chr5:+:23569155..23571116
Molecular Weight (calculated) 45753.90 Da
IEP (calculated) 5.26
GRAVY (calculated) -0.34
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)