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AT5G58260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
Curator
Summary (TAIR10)
Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.
Computational
Description (TAIR10)
oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: defense response to fungus, incompatible interaction, NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone), chloroplast envelope; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase, subunit N (InterPro:IPR020874); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1548-MONOMERBioCyc:ARA:GQT-781-MONOMEREC:1.6.5.-eggNOG:ENOG410IGG4eggNOG:ENOG4111IKJEMBL:AB019228EMBL:AK318705
EMBL:AY080743EMBL:AY113999EMBL:CP002688EnsemblPlants:AT5G58260EnsemblPlants:AT5G58260.1EnsemblPlants:AT5G58260.2entrez:835938
ExpressionAtlas:Q9LVM2GeneID:835938Genevisible:Q9LVM2GO:GO:0006810GO:GO:0009507GO:GO:0009535GO:GO:0009817
GO:GO:0009941GO:GO:0010258GO:GO:0010598GO:GO:0016655GO:GO:0048038hmmpanther:PTHR35515hmmpanther:PTHR35515:SF1
HOGENOM:HOG000238538InterPro:IPR020874KEGG:ath:AT5G58260OMA:RPPHLGHPaxDb:Q9LVM2Pfam:PF11909Pfam:Q9LVM2
PhylomeDB:Q9LVM2PRIDE:Q9LVM2PRO:PR:Q9LVM2Proteomes:UP000006548RefSeq:NP_001119457.1RefSeq:NP_200634.1STRING:3702.AT5G58260.1
TAIR:AT5G58260TCDB:3.D.1.8.1UniGene:At.20336UniProt:Q9LVM2
Coordinates (TAIR10) chr5:-:23561075..23561929
Molecular Weight (calculated) 23399.50 Da
IEP (calculated) 9.75
GRAVY (calculated) -0.17
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSRAICIQR VAPPCFEASQ VKKIKTVGSF LVNTRSKRRR STGVKCSSIA DYIGGDLVKP DIGQWLQDVE EHKAIAIYAP HEGGYEGRYL NRLKMQGYYF
101: LDISARGLGD PETTLLKNYP VCPAHLGKQP IARWYYPPEV DYRLAALPPS AKGLVVWVLE AKVLSKSELQ FLALLPSLRP NVRVIAECGN WRKFVWKPLA
201: EIANLAAQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)