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AT5G58250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWZGeggNOG:ENOG4111TQTEMBL:AB019228EMBL:CP002688EnsemblPlants:AT5G58250EnsemblPlants:AT5G58250.1entrez:835937
GeneID:835937GO:GO:0009507GO:GO:0009579Gramene:AT5G58250.1hmmpanther:PTHR35319hmmpanther:PTHR35319:SF2InterPro:IPR019616
KEGG:ath:AT5G58250OMA:PKNWVAPPfam:PF10674PhylomeDB:Q9LVM3Proteomes:UP000006548RefSeq:NP_200633.1SMR:Q9LVM3
STRING:3702.AT5G58250.1TAIR:AT5G58250UniGene:At.22226UniProt:Q9LVM3
Coordinates (TAIR10) chr5:+:23559558..23560372
Molecular Weight (calculated) 24105.60 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.31
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MWSVTGALTV AVPPTAAACR TKPFLISSSF PKQTKKLHLS SPSLSLPSSH FSSSFKTAAT SIEQQSSVNK GESTKYHFLV ANAKFMLDEE EHFQEQLFER
101: LRYFGERELV QDFWLVIEPK FLDNFPKITQ RLRRPAVALV STNGTWITFM KLRLDRVLYD SFEATSLDEA LASNPTTLEF DKPKNWVAPY PKYEPGWWDT
201: FLPKVTQESA V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)