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AT5G58170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SHV3-like 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SHV3-like 5 (SVL5); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 4 (TAIR:AT5G58050.1); Has 2139 Blast hits to 1578 proteins in 572 species: Archae - 0; Bacteria - 1688; Metazoa - 15; Fungi - 4; Plants - 324; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Protein Annotations
BioGrid:21173EC:3.1.4.46eggNOG:COG0584eggNOG:KOG2258EMBL:AB019228EMBL:AK118200EMBL:CP002688
EnsemblPlants:AT5G58170EnsemblPlants:AT5G58170.1entrez:835929Gene3D:3.20.20.190GeneID:835929Genevisible:Q9LVN0GO:GO:0006071
GO:GO:0006629GO:GO:0008889GO:GO:0031225GO:GO:0048046Gramene:AT5G58170.1hmmpanther:PTHR23344hmmpanther:PTHR23344:SF5
HOGENOM:HOG000239205InParanoid:Q9LVN0InterPro:IPR004129InterPro:IPR017946InterPro:IPR030395KEGG:ath:AT5G58170OMA:ADAHKQG
PANTHER:PTHR23344PaxDb:Q9LVN0Pfam:PF03009Pfam:Q9LVN0Pfscan:PS51704PhylomeDB:Q9LVN0PRIDE:Q9LVN0
PRO:PR:Q9LVN0PROSITE:PS51704ProteinModelPortal:Q9LVN0Proteomes:UP000006548RefSeq:NP_200625.1STRING:3702.AT5G58170.1SUPFAM:SSF51695
TAIR:AT5G58170tair10-symbols:SVL5UniGene:At.29293UniProt:Q9LVN0
Coordinates (TAIR10) chr5:-:23540261..23543092
Molecular Weight (calculated) 80042.10 Da
IEP (calculated) 4.90
GRAVY (calculated) 0.03
Length 750 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRFIIFFSL FIHLCVAAPQ TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSASA NDLAIGTSSP GLTMLCNLQM TKDGVGLCLS DIILDNATTI
101: SSVFPKAQKT YKVNGQDLKG WFVLDYDADT IFNNVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME HKLSPAEYLR SLQFRGINVI
201: SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR
301: TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMSKDGIAFC
401: HDAADLTAST TAMTIFMSRA TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF ITLADFLDFS KAKAVTGVMI NIENAAYLAS
501: KKGLGVVDAV KSALAKSTLD KQSTQKVLIQ SDDSSVLASF EAVPPYTRVL SIDKEIGGAP KPSVDEIKKY AEAVNLLRTS LVTVSQSFTT GKTNVVEEMH
601: KGNISVYVSV LRNEYISVAF DYFSDPTIEL ATFISGSGVD GVITEFPATA TRYLKSPCSD LNKEQPYAIL PAEAGGLVVV ADKEAQPPAS APNPPLEAKD
701: VIDPPLPPVA NLAASNATGG AQSHPPPASG TVANAANLGL SLLAMLALGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)