suba logo
AT5G58130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Encodes ROS3 (repressor of silencing 3), a RNA-binding protein required for DNA demethylation.
Computational
Description (TAIR10)
REPRESSOR OF SILENCING 3 (ROS3); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 14321 Blast hits to 7664 proteins in 903 species: Archae - 313; Bacteria - 6242; Metazoa - 2615; Fungi - 1429; Plants - 503; Viruses - 131; Other Eukaryotes - 3088 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IM02eggNOG:ENOG41126QMEMBL:AB024029EMBL:AK229306
EMBL:CP002688EnsemblPlants:AT5G58130EnsemblPlants:AT5G58130.1entrez:835925
Gene3D:3.30.70.330GeneID:835925GO:GO:0000166GO:GO:0003723
GO:GO:0005634GO:GO:0016458GO:GO:0080111Gramene:AT5G58130.1
hmmpanther:PTHR23099hmmpanther:PTHR23099:SF0InterPro:IPR000504InterPro:IPR012677
KEGG:ath:AT5G58130ncoils:CoilOMA:LGETHISPfam:PF14259
Pfscan:PS50102PhylomeDB:Q9FGT1PROSITE:PS50102Proteomes:UP000006548
RefSeq:NP_200621.1SMART:SM00360SMR:Q9FGT1STRING:3702.AT5G58130.1
SUPFAM:SSF54928TAIR:AT5G58130tair10-symbols:ROS3UniGene:At.49184
UniGene:At.63913UniProt:Q9FGT1
Coordinates (TAIR10) chr5:-:23521190..23523766
Molecular Weight (calculated) 81083.70 Da
IEP (calculated) 4.51
GRAVY (calculated) -0.80
Length 748 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEKSSGGGV RLHVGGLGES VGRDDLLKIF SPMGTVDAVE FVRTKGRSFA YIDFSPSSTN SLTKLFSTYN GCVWKGGRLR LEKAKEHYLA RLKREWEAAS
101: STSDNTIKAP SDSPPATHLN IFFPRLRKVK PMPLSGTGKH KYSFQRVPVS SSLPRSFCDC EEHSNSSLTP REIHLHDLEA VNVGRQEAEV NVMNSVMNKL
201: FEKNNVDPEE DNEIEADQDN LIINVASSGN DMDSALDMLS RKRKSILNKK TPSEEGYSEG RKGNLTHPSK NRQTISLEET GRQESSQAIR GKKKPSEVVP
301: DKSSDEPSRT KDLEQSIDNI SWSQKSSWKS LMANGNSNDF SVSSFLPGVG SSKAVQPAPR NTDLAGLPSR ENLKKKTKRK RVTSTIMAED LPVSDDIKRD
401: DSDTMADDIE RDDSDAVEYY TACESMADDT ASDSVAERDD SDAVEDDTAI DSMADDPASD SVAESDDGDA VENDTAIDSM ADDTVSNSMA ESDDGDNVED
501: DTAIDSMCDD TANDDVGSDD SGSLADTVSD TSVEAVPLEF VANTEGDSVD GKSNVEKHEN VAEDLNAEKE SLVVKENVVD EEEAGKGPLK ASNKSTGGSS
601: WLQKASWTQL VSDKNTSSFS ITQLFPDLTS DKGEAAGVIN NVGNQFSNSN QTASAMKQTD YASSSGGFVA AGVPVDSTPV RSLDENRQRL NGKNVSEGAK
701: LGAKKKIIKR KVGSGDTCTF MRSSTSLKEW AKAKKALSEP RRKKNSEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)