AT5G58120.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G63750.3); Has 15550 Blast hits to 12870 proteins in 462 species: Archae - 6; Bacteria - 602; Metazoa - 848; Fungi - 29; Plants - 13811; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:23517492..23520927 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119942.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1046 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSSRS RTWRYRVFTN FHGPDVRKTF LSHLRKQFSY NGISMFNDQS IERSQTIVPA LTGAIKESRI SIVVLSKNYA SSRWCLDELL EILKCREDIG 0101: QIVMTVFYGV DPSDVRKQTG EFGIAFNKTC EGKTNEETQK WSKALNDVGN IAGEHFFNWD NEAKMIEKIA RDVSNKLNAT ISWDFEDMVG IEAHLQKMQS 0201: LLHLDYEDGA MIVGIYGPAG IGKTTIARAL HSRLSSSFQL TCFMENIRGS YNSGLDEYGL KLRLQEQLLS KVLNHDGIRI NHLGAIPERL CDQKVLIILD 0301: DVDDLQQLEA LANETNWFGP GSRIIVTTED QELLEQHDVN KKYHVDFPTR EEACKIFCTY AFRRSFAPYG FEKLAERVTW LCSNLPLGLR VMGSTLRGKK 0401: EDDWEGILRR LENSLDRKID GVLRVGYDHL CEDDQFLYLL IAFFFNYVDD DHVKAMLVED NLDVKLGLKT LAYKSLIQIS AEGNIVMHKL LQRVGREAIQ 0501: RQEPTKRRIL IDAREICDVL RYGKGTSNVS GISFDTSDMS EVTISDDAFK RLHDLRFLKV TKSRYDGKYR MHIPAGIEFP CLLRLLHWEA YPSKCLPPTF 0601: NPEFLVELNM QGSQLEHLWS GTQSLRNLKN MDLGWSPNLK ELPDLTNATN LEDLNLNSCE SLVEIPSSFS HLHKLKNLWM SYCINLQVIP AHMNLVSLER 0701: VTMTGCSRFR KIPVISTHIN YLDIAHNTEF EVVHASIALW CRLHYLNMSY NENFMGLTHL PMSLTQLILR YSDIERIPDC IKALHQLFSL DLTGCRRLAS 0801: LPELPGSLLD LEAEDCESLE TVFSPLHTPR ALLNFTNCFK LGGQARRAII RRRSEIIGKA LLPGREVPAE FDHRAKGNSL TIILNGYRPS YDFIQYLVCV 0901: VISPNQEITK ISDSSTLLCH TNGYIFPSYE EVYIGAVSKC RKEHLFIFRS GYYLNVDPSG ASREIVFEFS SKSQDFDIIE CGVKIWTAQS IERGYLVFED 1001: DNEIKHDDHT NRVRGHYKAS NVDYKSVSRK RPRKTDLKLE IPRRRF |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)