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AT5G58090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 12805588
AmiGO : plasma membrane 16618929
AmiGO : plasma membrane 17317660
AmiGO : plasma membrane 17644812
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 12805588
TAIR : plasma membrane 16618929
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:15574830 (2004): plasma membrane
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G31140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G58090-MONOMERBioGrid:21165CAZy:CBM43CAZy:GH17EC:3.2.1.39eggNOG:ENOG410IEQNeggNOG:ENOG410YE7X
EMBL:AB024029EMBL:AY058864EMBL:BT000612EMBL:CP002688EnsemblPlants:AT5G58090EnsemblPlants:AT5G58090.1entrez:835921
Gene3D:3.20.20.80GeneID:835921Genevisible:Q93Z08GO:GO:0005886GO:GO:0005975GO:GO:0006952GO:GO:0009506
GO:GO:0031225GO:GO:0042973GO:GO:0046658Gramene:AT5G58090.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF90HOGENOM:HOG000238221
InParanoid:Q93Z08IntAct:Q93Z08InterPro:IPR000490InterPro:IPR012946InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT5G58090
KO:K19893OMA:IDPNFPVPaxDb:Q93Z08Pfam:PF00332Pfam:PF07983Pfam:Q93Z08PhylomeDB:Q93Z08
PRIDE:Q93Z08PRO:PR:Q93Z08PROSITE:PS00587ProteinModelPortal:Q93Z08Proteomes:UP000006548RefSeq:NP_200617.2scanprosite:PS00587
SMART:SM00768SMR:Q93Z08STRING:3702.AT5G58090.1SUPFAM:SSF51445TAIR:AT5G58090UniGene:At.9709UniProt:Q93Z08
Coordinates (TAIR10) chr5:-:23505556..23507193
Molecular Weight (calculated) 52214.30 Da
IEP (calculated) 5.69
GRAVY (calculated) -0.04
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MGWGSVLLLL AVALLCQRAS SIGANWGTQA SHPLPPDIVV RMLRENGIQK VKLFDAEYDT LRALGKSGIE VMVGIPNEML ATLASSLKAA EKWVAKNVST
101: HISTDNVNIR YVAVGNEPFL STYNGSYLST TFPALRNIQI AIIKAGLQNQ VKVTCPLNAD VYDSSTTFPS GGDFRANIRD LMITIVKFLS ENGGPFTVNI
201: YPYISLYTNP DFPVDYAFFD GNAQPLNDGG TFYYNMFDAN YDTLVHALEK NGFGNMPIII GEIGWPTDGD SNANLDYAKK FNQGFMAHIS GGKGTPRRPG
301: PIDAYLFSLI DEDAKSVQPG YFERHWGIFT FDGLPKYALN LGTTNTGALI QAKGVRYLER KWCVMKPNVR LDDPQVAPAV SYACSLGDCT SLGVGTSCAN
401: LDGKQNISYA FNSYYQIQDQ LDTACKFPNI SEVTKTDPST GTCRFPIMIE PYYGGAAREH GFFFPLLMVA AIAVSIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)