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AT5G58060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNARE-like superfamily protein
Curator
Summary (TAIR10)
member of YKT6 Gene Family
Computational
Description (TAIR10)
YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2); Has 1443 Blast hits to 1443 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 302; Plants - 452; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).
Protein Annotations
BioGrid:21162EMBL:AB024029EMBL:AF325040EMBL:AF385703EMBL:AY133669EMBL:CP002688EMBL:U64918
EnsemblPlants:AT5G58060EnsemblPlants:AT5G58060.1entrez:835918ExpressionAtlas:Q9ZRD6Gene3D:3.30.450.50GeneID:835918Genevisible:Q9ZRD6
GO:GO:0005886GO:GO:0015031GO:GO:0016021GO:GO:0016192hmmpanther:PTHR21136hmmpanther:PTHR21136:SF106HOGENOM:HOG000189970
InParanoid:Q9ZRD6InterPro:IPR001388InterPro:IPR010908InterPro:IPR011012iPTMnet:Q9ZRD6Pfam:PF00957Pfam:PF13774
Pfam:Q9ZRD6Pfscan:PS50859Pfscan:PS50892PhylomeDB:Q9ZRD6PRIDE:Q9ZRD6PRO:PR:Q9ZRD6PROSITE:PS00417
PROSITE:PS50859PROSITE:PS50892ProteinModelPortal:Q9ZRD6Proteomes:UP000006548Reactome:R-ATH-6807878RefSeq:NP_200614.1scanprosite:PS00417
SMART:SM01270SMR:Q9ZRD6SUPFAM:SSF58038SUPFAM:SSF64356TAIR:AT5G58060tair10-symbols:ATGP1tair10-symbols:ATYKT61
tair10-symbols:YKT61UniGene:At.21115UniGene:At.24479UniProt:Q9ZRD6
Coordinates (TAIR10) chr5:+:23498277..23500128
Molecular Weight (calculated) 22544.80 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.41
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MKITALLVLK CAPEASDPVI LSNASDVSHF GYFQRSSVKE FVVFVGRTVA SRTPPSQRQS VQHEEYKVHA YNRNGLCAVG FMDDHYPVRS AFSLLNQVLD
101: EYQKSFGESW RSAKEDSNQP WPYLTEALNK FQDPAEADKL LKIQRELDET KIILHKTIDS VLARGEKLDS LVEKSSDLSM ASQMFYKQAK KTNSCCTIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)