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AT5G58030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transport protein particle (TRAPP) component
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194), TRAPP I complex, Trs31 (InterPro:IPR016696); Has 560 Blast hits to 545 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 199; Plants - 63; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Protein Annotations
DNASU:835915eggNOG:COG5128eggNOG:KOG3315EMBL:AB024029EMBL:AK227834EMBL:AY086712EMBL:BT004803
EMBL:CP002688EnsemblPlants:AT5G58030EnsemblPlants:AT5G58030.1entrez:835915GeneID:835915Gramene:AT5G58030.1hmmpanther:PTHR20902
hmmpanther:PTHR20902:SF0HOGENOM:HOG000176758IntAct:Q9FGU1InterPro:IPR007194InterPro:IPR016696InterPro:IPR024096KEGG:ath:AT5G58030
OMA:GKTIYHRPANTHER:PTHR20902Pfam:PF04051PhylomeDB:Q9FGU1PIRSF:PIRSF017479Proteomes:UP000006548Reactome:R-ATH-204005
RefSeq:NP_200611.1SMR:Q9FGU1STRING:3702.AT5G58030.1SUPFAM:SSF111126TAIR:AT5G58030UniGene:At.23616UniGene:At.28128
UniProt:Q9FGU1
Coordinates (TAIR10) chr5:-:23487021..23488483
Molecular Weight (calculated) 21866.50 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.13
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGVGKMKQY SNVLDKPLSK GKQEVSLTAF AFLFSELVQY NQTQVDNIAE LERRLEDAGY AVGSRVLELL CNREKGNRRE TRLLGILSFV HSTVWKVLFG
101: KVADSLEKGT EHEDEYMISE KELLVNRFIS IPKDMGTFNC GAFVAGIVKG VLDNAGFPAV VTAHFVPIEG QQRPRTTILI KFADEVLKRE ARLSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)