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AT5G58010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LJRHL1-like 3
Curator
Summary (TAIR10)
Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair development. One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3).
Computational
Description (TAIR10)
LJRHL1-like 3 (LRL3); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: LJRHL1-like 1 (TAIR:AT2G24260.1); Has 3430 Blast hits to 3424 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 226; Fungi - 49; Plants - 3153; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:21157eggNOG:ENOG410IYEIeggNOG:ENOG4111MVPEMBL:AB026635EMBL:AF488614EMBL:CP002688EnsemblPlants:AT5G58010
EnsemblPlants:AT5G58010.1entrez:835913Gene3D:4.10.280.10GeneID:835913Genevisible:Q9LSQ3GO:GO:0001046GO:GO:0001228
GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0006366GO:GO:0045944GO:GO:0080147Gramene:AT5G58010.1
hmmpanther:PTHR16223hmmpanther:PTHR16223:SF42HOGENOM:HOG000239571InParanoid:Q9LSQ3InterPro:IPR011598KEGG:ath:AT5G58010OMA:DQFHHPQ
PaxDb:Q9LSQ3Pfam:PF00010Pfam:Q9LSQ3Pfscan:PS50888PhylomeDB:Q9LSQ3PRIDE:Q9LSQ3PRO:PR:Q9LSQ3
PROSITE:PS50888ProteinModelPortal:Q9LSQ3Proteomes:UP000006548RefSeq:NP_200609.1SMART:SM00353SMR:Q9LSQ3STRING:3702.AT5G58010.1
SUPFAM:SSF47459TAIR:AT5G58010tair10-symbols:LRL3UniGene:At.29300UniProt:Q9LSQ3
Coordinates (TAIR10) chr5:-:23483670..23484889
Molecular Weight (calculated) 31472.10 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.42
Length 297 amino acids
Sequence (TAIR10)
(BLAST)
001: MENGNGEGKG EFINQNNDFF LDSMSMLSSL PPCWDPSLPP PPPPPQSLFH ALAVDAPFPD QFHHPQESGG PTMGSQEGLQ PQGTVSTTSA PVVRQKPRVR
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)