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AT5G57960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP-binding protein, HflX
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GTP-binding protein, HflX; FUNCTIONS IN: GTP binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HflX (InterPro:IPR016496), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding protein, HflX (TAIR:AT3G49725.1); Has 31952 Blast hits to 30531 proteins in 2948 species: Archae - 298; Bacteria - 25096; Metazoa - 510; Fungi - 190; Plants - 240; Viruses - 0; Other Eukaryotes - 5618 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2358-MONOMEReggNOG:COG2262eggNOG:KOG0410EMBL:AB013396EMBL:CP002688EnsemblPlants:AT5G57960EnsemblPlants:AT5G57960.1
entrez:835907Gene3D:3.40.50.300GeneID:835907GO:GO:0005525GO:GO:0009507GO:GO:0043022Gramene:AT5G57960.1
HAMAP:MF_00900hmmpanther:PTHR10229hmmpanther:PTHR10229:SF2HOGENOM:HOG000260368InterPro:IPR005225InterPro:IPR006073InterPro:IPR016496
InterPro:IPR025121InterPro:IPR027417InterPro:IPR030394InterPro:IPR032305KEGG:ath:AT5G57960KO:K03665OMA:HLPHQIV
PANTHER:PTHR10229Pfam:PF01926Pfam:PF13167Pfam:PF16360Pfscan:PS51705PhylomeDB:Q9FJM0PRINTS:PR00326
PROSITE:PS51705Proteomes:UP000006548RefSeq:NP_200604.1SMR:Q9FJM0STRING:3702.AT5G57960.1SUPFAM:SSF52540TAIR:AT5G57960
TIGRfam:TIGR00231TIGRfam:TIGR03156TIGRFAMs:TIGR00231TIGRFAMs:TIGR03156UniGene:At.7661UniProt:Q9FJM0
Coordinates (TAIR10) chr5:-:23463133..23466481
Molecular Weight (calculated) 60531.70 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.32
Length 540 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSFYLSSSP IFKLQWHANH KPKPNRAIVS FPPSRLHANC YSWRLSCNLA QHGIELEETV EEDEILQVLD LPTEETNLDN ETIASPSKML RKKKGDEESL
101: DDRFKLRNGK EIFEEKAYLV GVERKGDGEC LFNIEESLEE LEQLADTAGL AVVGSTYQKL ASPNPRTYIG SGKVAEIKSA INALDVETVI FDDELSPGQL
201: RNLEKAFGGD VRVCDRTALI LDIFNQRAAT HEAALQVALA QMEYQLPRLT RMWTHLERQS GGQVKGMGEK QIEVDKRILR TQIGVLKKEL ESVRKHRKQY
301: RSRRVAIPVP VVSLVGYTNA GKSTLLNQLT GANVLAENRL FATLDPTTRR VQMQNGKEFL LTDTVGFIQK LPTTLVAAFR ATLEEIAESS LLVHVVDISH
401: PLAEQQIEAV EKVMSELDVS SIPKLVVWNK VDRVDDPQKV KLEAEETGDT ICISALTGEG LDDFCNAVHE KLKDSMVWVE ALLPFDKGDL LSTIHKVGMV
501: KETEYTENGT LIRAHVPLRF AQLLKPMRHL VKDTSISQRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)