AT5G57940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cyclic nucleotide gated channel 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Cyclic nucleotide gated channel family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cyclic nucleotide gated channel 5 (CNGC5); FUNCTIONS IN: cyclic nucleotide binding, calmodulin binding, potassium channel activity; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 6 (TAIR:AT2G23980.1); Has 3705 Blast hits to 3494 proteins in 271 species: Archae - 0; Bacteria - 60; Metazoa - 1584; Fungi - 66; Plants - 1032; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23457116..23460439 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81973.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 717 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGKRENFVR VDDLDSRLPS SSVAFQQNYA SNFSGQLHPI HASNETSRSF KKGIQKGSKG LKSIGRSLGF GVYRAVFPED LKVSEKKIFD PQDKFLLYCN 101: KLFVASCILS VFVDPFFFYL PVINAESKCL GIDRKLAITA STLRTFIDVF YLAHMALQLR TAYIAPSSRV FGRGELVIDP AQIAKRYLQR WFIIDFLSVL 201: PLPQIVVWRF LQSSNGSDVL ATKQALLFIV LVQYIPRFLR VLPLTSELKR TAGVFAETAW AGAAYYLLLY MLASHIVGAF WYLLALERND ACWQEACIDA 301: GNCSTDFLYC GNQNMDGYAV WNRAKESVLK SKCRADLDDN NPPFDFGIYT QALSSGIVSS QNFIVKYCYC LWWGLQNLST LGQGLETSTY PMEIIFSISL 401: AISGLILFAL LIGNMQTYLQ SLTIRLEEMR VKRRDSEQWM HHRMLPQDLR ERVRRYDQYK WLETRGVDEE YLVQNLPKDL RRDIKRHLCL ALVRRVPLFK 501: SMDDKLLDAI CMRLKPCLFT ESTYLVREGD PVDEMLFIIR GRLESVTTDG GRSGFFNRSL LKEGEFCGEE LLTWALDPKS GVNLPSSTRT VKALTEVEAF 601: ALTSEELKFV ASQFRRLHSR QVQHTFRFYS HQWRTWAACF IQAAWRRYCK RKKMEEAEAE AAAVSSSTAG PSYSIGAAFL ATKFAANALR TIHRNRNTKI 701: RDLVKLQKPP EPDFTAD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)