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AT5G57930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis thaliana protein of unknown function (DUF794)
Curator
Summary (TAIR10)
ACCUMULATION OF PHOTOSYSTEM ONE 2
Computational
Description (TAIR10)
ACCUMULATION OF PHOTOSYSTEM ONE 2 (APO2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT1G64810.2); Has 141 Blast hits to 119 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEP8eggNOG:ENOG410XP6UEMBL:AB013396EMBL:AF375421
EMBL:AY062701EMBL:AY114672EMBL:CP002688EnsemblPlants:AT5G57930
EnsemblPlants:AT5G57930.1entrez:835904GeneID:835904Genevisible:Q8W4A5
GO:GO:0003723GO:GO:0009507hmmpanther:PTHR10388hmmpanther:PTHR10388:SF15
HOGENOM:HOG000239455InParanoid:Q8W4A5InterPro:IPR023342KEGG:ath:AT5G57930
OMA:VGHPFKSPaxDb:Q8W4A5Pfam:PF05634Pfam:Q8W4A5
Pfscan:PS51499PhylomeDB:Q8W4A5PRIDE:Q8W4A5PRO:PR:Q8W4A5
PROSITE:PS51499Proteomes:UP000006548RefSeq:NP_200601.3RefSeq:NP_851208.1
STRING:3702.AT5G57930.2TAIR:AT5G57930tair10-symbols:APO2tair10-symbols:emb1629
UniGene:At.27440UniProt:Q8W4A5
Coordinates (TAIR10) chr5:+:23454690..23456354
Molecular Weight (calculated) 49940.40 Da
IEP (calculated) 10.03
GRAVY (calculated) -0.47
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MSITYSAISF SGFSPKSVPF AIHSVTRRQF LNPNTFYRFG FSPSLQGSSI EFSLQLNSRV VLSKERRSLP LVVRNDRPQN EDLPKQYTRR EKKPFPVPIV
101: DLRRAARERV KNNKDKPKRP LPPPKNGMVV KSLVPLAYKV YNARIRLINN LHRLMKVVRV NACGWCNEIH VGPYGHPFKS CKGPNTSQRK GLHEWTNSVI
201: EDVIVPLEAY HLFDRLGKRI RHDERFSIPR VPAVVELCIQ GGVEIPEFPA KRRRKPIIRI GKSEFVDADE TELPDPEPQP PPVPLLTELP VSEITPPSSE
301: EETVSLAEET LQAWEEMRAG AKKLMRMYRV RVCGYCPEVH VGPTGHKAQN CGAFKHQQRN GQHGWQSAVL DDLIPPRYVW HVPDVNGPPM QRELRSFYGQ
401: APAVVEICAQ AGAVVPEHYR ATMRLEVGIP SSVKEAEMVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)