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AT5G57910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.990
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J270eggNOG:ENOG410YP3WEMBL:AK119128EMBL:BT005226EMBL:CP002688EnsemblPlants:AT5G57910EnsemblPlants:AT5G57910.1
entrez:835902GeneID:835902Gramene:AT5G57910.1hmmpanther:PTHR34807hmmpanther:PTHR34807:SF3HOGENOM:HOG000005952IntAct:Q8GW24
KEGG:ath:AT5G57910ncoils:CoilOMA:HMETEAMPhylomeDB:Q8GW24Proteomes:UP000006548RefSeq:NP_568871.1STRING:3702.AT5G57910.1
TAIR:AT5G57910UniGene:At.43058UniProt:Q8GW24
Coordinates (TAIR10) chr5:-:23451259..23452463
Molecular Weight (calculated) 24094.40 Da
IEP (calculated) 10.25
GRAVY (calculated) -1.23
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPTHGDFTP LNSNHFEDPK VRFRHHSLMQ DYGELHMETE AMRKRLQAVR ERKATLMAEV RFLRRRYRHL RQDQPQEIKK VRRSNGGKKI RVEVSPSNKS
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)