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AT5G57815.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cytochrome c oxidase, subunit Vib family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cytochrome c oxidase, subunit Vib family protein; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); BEST Arabidopsis thaliana protein match is: Cytochrome c oxidase, subunit Vib family protein (TAIR:AT4G28060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121WMeggNOG:KOG3057EMBL:AB013396EMBL:AF412096
EMBL:AK117656EMBL:AK228364EMBL:AY086201EMBL:AY113061
EMBL:CP002688EnsemblPlants:AT5G57815EnsemblPlants:AT5G57815.1entrez:835891
Gene3D:1.10.10.140GeneID:835891Genevisible:Q945L0GO:GO:0004129
GO:GO:0005739Gramene:AT5G57815.1gramene_pathway:1.9.3.1gramene_pathway:PWY-3781
hmmpanther:PTHR11387hmmpanther:PTHR11387:SF17HOGENOM:HOG000165128InParanoid:Q945L0
InterPro:IPR003213KEGG:ath:AT5G57815KO:K02267OMA:FHRCNKA
PaxDb:Q945L0Pfam:PF02297Pfam:Q945L0PhylomeDB:Q945L0
PIRSF:PIRSF000278PRO:PR:Q945L0ProteinModelPortal:Q945L0Proteomes:UP000006548
RefSeq:NP_568867.1SMR:Q945L0STRING:3702.AT5G57815.1SUPFAM:0045397
SUPFAM:SSF47694TAIR:AT5G57815UniGene:At.26403UniProt:Q945L0
Coordinates (TAIR10) chr5:+:23426753..23427637
Molecular Weight (calculated) 9254.68 Da
IEP (calculated) 5.14
GRAVY (calculated) -1.03
Length 78 amino acids
Sequence (TAIR10)
(BLAST)
1: MEDEIELKTA PADFRFPTTN QTRHCFTRYI EFHRCTTAKG EESNDCERFA KYYRALCPGE WVDKWNEQRE SGTFPGPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)