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AT5G57770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.513
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKEXeggNOG:ENOG410YE25EMBL:CP002688EnsemblPlants:AT5G57770
EnsemblPlants:AT5G57770.1entrez:835885GeneID:835885Gramene:AT5G57770.1
hmmpanther:PTHR31351hmmpanther:PTHR31351:SF3InParanoid:F4KC40InterPro:IPR008546
InterPro:IPR013666KEGG:ath:AT5G57770OMA:CAPEKPSPaxDb:F4KC40
Pfam:PF05703Pfam:PF08458PRIDE:F4KC40Proteomes:UP000006548
RefSeq:NP_200585.3STRING:3702.AT5G57770.1TAIR:AT5G57770UniGene:At.47214
UniGene:At.70163UniProt:F4KC40
Coordinates (TAIR10) chr5:-:23401094..23403112
Molecular Weight (calculated) 44871.60 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.37
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSLALTST DHNPSPSEAH PDTMDFLSRE WCNFAVQSLH PDPILYDRSI VPVETSIAKF QGDSSPVSCA MMDTSMKMDD PDFKPSMPSW KTNDVKSWIW
101: MQQAMHPELS YEGFFRKKLK LPWKITPSIK KWWKEIKAKR KEEVRLQRAE VHAAVSLAGL AAALAAVASE NAGKDGGNGR PSTRETAVAS AAAVVAAQCA
201: QMAETMGANR DQLSTMIGSA MTGTSVSEIL TLTASATTSL RGAATLKARR GCKINRLNGS APVLPIEDSS YLPPEFDKNT SVLAKGTDLF VETPDGDFKA
301: RTVSMVLNKD GKVILKMKKH NLLRTKKESI VTNVHVELYK DSDSEDNNIE DTCYLIVLRT NRGAIKLDMA DDYNRYKTWV TTIQHMLTLS SSSLSTNYAL
401: TFYNKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)