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AT5G57720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G06160.2); Has 295 Blast hits to 283 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 6; Plants - 282; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX4PeggNOG:ENOG41104AVEMBL:AB018118EMBL:AB493797EMBL:CP002688EnsemblPlants:AT5G57720EnsemblPlants:AT5G57720.1
entrez:835879Gene3D:2.40.330.10GeneID:835879Genevisible:Q9FHH1GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT5G57720.1hmmpanther:PTHR31920HOGENOM:HOG000097078InParanoid:Q9FHH1InterPro:IPR003340InterPro:IPR015300
KEGG:ath:AT5G57720OMA:KIFNSHEPaxDb:Q9FHH1Pfam:PF02362Pfam:Q9FHH1Pfscan:PS50863PhylomeDB:Q9FHH1
PRIDE:Q9FHH1PRO:PR:Q9FHH1PROSITE:PS50863ProteinModelPortal:Q9FHH1Proteomes:UP000006548RefSeq:NP_200580.1SMART:SM01019
SMR:Q9FHH1STRING:3702.AT5G57720.1SUPFAM:SSF101936TAIR:AT5G57720UniGene:At.55606UniProt:Q9FHH1
Coordinates (TAIR10) chr5:-:23389927..23391526
Molecular Weight (calculated) 34400.40 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.55
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLENGFPPY PDFLKIFNSH EDSQLLVIPR SYNRYYPNPL PQTAVLKNPE GRFWNVQWTK SQEVIISLQE GWVKFVKDNG LIDRDFLLFT YDGSRSFWVR
101: IHRNGLPLEP TAPIKIQEIS DDEDETNGDG DPHMEEEGDT DENMIVSLSL GSSDEVGDDD DDDYDTAICD EVNKASGSSK KGRVTRKHRD DSLASITPQI
201: FLADPNNPFF ISTSSCSRRI LVIARQVIKD YGLNFDGTVN LIDGFGELTR KVGKWKDRVV IYKWNEMFTR NKVKQGDVII CEIIREEDVV RSIKVHFVKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)