AT5G57700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.586 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BNR/Asp-box repeat family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BNR/Asp-box repeat family protein; CONTAINS InterPro DOMAIN/s: Neuraminidase (InterPro:IPR011040), BNR repeat (InterPro:IPR002860); Has 764 Blast hits to 756 proteins in 302 species: Archae - 6; Bacteria - 617; Metazoa - 0; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23375275..23376943 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 39042.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.42 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||
| Length | 352 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSSQMSETE FKVLLETFTF PADSAPFKSC HASTIVEVVK DHFLAAYFGG TREGAPDVKI WLQHFKDGQW DSPVIVDEEP GVPMYNPVLF KLPSHELLLF 101: YKIGQEVQKW SGCMKRSYDK GITWTEREQL PPGILGPIKN KPILLEDGTL LCGSSVESWN SWGAWMEVTS DAGRTWRKKG PIYIQGKSLS VIQPVPYQTA 201: AGNLRILLRS FTGIDRICIS ESLDGGENWS FAVPTVLPNP NSGIDGVKLK DGRLVLAYNT DSRGVLKLGV SLDDGDSWTD ILTLEESPGM EYSYPAVIQA 301: GDGNVHVTYT YNRTQIKHVV LKTATDIDSK PYRHGEAGGG HVNLDLYEPN IN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)