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AT5G57660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CONSTANS-like 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONSTANS-like 5 (COL5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 4 (TAIR:AT5G24930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21116eggNOG:COG5641eggNOG:KOG1601EMBL:AB018118
EMBL:AY057632EMBL:AY080747EMBL:AY088432EMBL:AY114006
EMBL:CP002688EnsemblPlants:AT5G57660EnsemblPlants:AT5G57660.1entrez:835872
GeneID:835872Genevisible:Q9FHH8GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:0008270GO:GO:0009416GO:GO:0009909
Gramene:AT5G57660.1hmmpanther:PTHR31319hmmpanther:PTHR31319:SF14HOGENOM:HOG000238833
InParanoid:Q9FHH8IntAct:Q9FHH8InterPro:IPR000315InterPro:IPR010402
KEGG:ath:AT5G57660OMA:HSFTRHEPaxDb:Q9FHH8Pfam:PF00643
Pfam:PF06203Pfam:Q9FHH8Pfscan:PS50119Pfscan:PS51017
PhylomeDB:Q9FHH8PRIDE:Q9FHH8PRO:PR:Q9FHH8PROSITE:PS50119
PROSITE:PS51017ProteinModelPortal:Q9FHH8Proteomes:UP000006548RefSeq:NP_568863.1
SMART:SM00336STRING:3702.AT5G57660.1TAIR:AT5G57660tair10-symbols:ATCOL5
tair10-symbols:COL5UniGene:At.20797UniProt:Q9FHH8
Coordinates (TAIR10) chr5:+:23355573..23356729
Molecular Weight (calculated) 38822.20 Da
IEP (calculated) 6.43
GRAVY (calculated) -0.29
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)