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AT5G57655.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : plasma membrane 17151019
AmiGO : vacuole 15539469
TAIR : vacuole 15539469
TAIR : plasma membrane 17151019
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xylose isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
xylose isomerase family protein; FUNCTIONS IN: xylose isomerase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xylose isomerase-like, TIM barrel domain (InterPro:IPR013022), Xylose isomerase (InterPro:IPR001998), Xylose isomerase, TIM barrel domain (InterPro:IPR012307); Has 2369 Blast hits to 2369 proteins in 858 species: Archae - 2; Bacteria - 1867; Metazoa - 8; Fungi - 2; Plants - 76; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).
Protein Annotations
EC:5.3.1.5eggNOG:COG2115eggNOG:ENOG410IG6WEMBL:CP002688
EnsemblPlants:AT5G57655EnsemblPlants:AT5G57655.1entrez:835871ExpressionAtlas:F4KC24
Gene3D:3.20.20.150GeneID:835871GO:GO:0006098GO:GO:0009045
GO:GO:0042732GO:GO:0046872Gramene:AT5G57655.1gramene_pathway:5.3.1.5
gramene_pathway:XYLCAT-PWYhmmpanther:PTHR32176hmmpanther:PTHR32176:SF0InterPro:IPR001998
InterPro:IPR013022KEGG:00040+5.3.1.5KEGG:00051+5.3.1.5ncoils:Coil
PaxDb:F4KC24Pfscan:PS51415PRIDE:F4KC24PRINTS:PR00688
PROSITE:PS51415ProteinModelPortal:F4KC24Proteomes:UP000006548RefSeq:NP_851203.1
SMR:F4KC24STRING:3702.AT5G57655.2SUPFAM:SSF51658TAIR:AT5G57655
UniGene:At.20353UniGene:At.67777UniProt:F4KC24
Coordinates (TAIR10) chr5:+:23347030..23348720
Molecular Weight (calculated) 32409.60 Da
IEP (calculated) 7.89
GRAVY (calculated) -0.35
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKVEFFMLL LCFIAASSLV SADPPTCPAD LGGKCSDSDD WQGDFFPEIP KIKYEGPSSK NPLAYRWYNA EEEILGKKMK DWFRFSVAFW HTFRGTGGDP
101: FGAATKYWPW EDGTNSVSMA KRRMRANFEF LKKLGVDWWC FHDRDIAPDG TTLEESNKNL DEVIELAKEL QKGSKIKPLW GTAQLFLHPR YMHGGATSSE
201: VGVYAYAAAQ VKKAMEVTHY LGGENYVFWG GREGYQTLLN TDMGRELDHL ARFFEAAVAY KKKIGFKGKS TASFSCPVFS LMGVIAQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)