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AT5G57580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calmodulin-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calmodulin-binding protein; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2); Has 341 Blast hits to 322 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJDWeggNOG:ENOG4111EYIEMBL:AB011482EMBL:AY056289EMBL:AY091434EMBL:CP002688EnsemblPlants:AT5G57580
EnsemblPlants:AT5G57580.1entrez:835862GeneID:835862Genevisible:Q9FKL6GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0006950Gramene:AT5G57580.1hmmpanther:PTHR31713hmmpanther:PTHR31713:SF12HOGENOM:HOG000237471InParanoid:Q9FKL6
InterPro:IPR012416iPTMnet:Q9FKL6KEGG:ath:AT5G57580OMA:GRYAVNSPaxDb:Q9FKL6Pfam:PF07887Pfam:Q9FKL6
PhylomeDB:Q9FKL6PRIDE:Q9FKL6PRO:PR:Q9FKL6ProteinModelPortal:Q9FKL6Proteomes:UP000006548RefSeq:NP_200566.1STRING:3702.AT5G57580.1
TAIR:AT5G57580UniGene:At.7485UniProt:Q9FKL6
Coordinates (TAIR10) chr5:-:23314994..23317683
Molecular Weight (calculated) 72368.10 Da
IEP (calculated) 6.01
GRAVY (calculated) -0.57
Length 647 amino acids
Sequence (TAIR10)
(BLAST)
001: MMDSGNNNMN RAKRNLDGND DDQPERKRPA FASVIVEALK VDSLQKLCSS LEPILRRVVS EELERALAKL GPARLTGSSG SSPKRIEGPD GRKLQLHFKS
101: RLSLPLFTGG KVEGEQGAVI HVVLIDANTG RAVVYGPEAS AKLHIVVLEG DFNTEDDEDW TQEEFESHVV KERSGKRPLL TGEVYVTLKE GVGTLGELVF
201: TDNSSWIRSR KFRLGLRVVS GCCDGMRIRE AKTEAFVVKD HRGELYKKHY PPALNDDVWR LDKIGKDGAF HKKLTAEGIN TVEDFLRVMV KDSPKLRTIL
301: GSGMSNKMWD ALVEHAKTCV QSSKLYIYYA EDSRNVGVVF NNIYELSGLI SGDQYFSADS LTDSQKVYVE GLVKKAYENW NLVIEYDGKS LLDLKQPQRL
401: SITHTNLENY STAAIDHPMQ MVAGHSSSMP PNQSPVLSDF AIGGYDQTLA TRYHSHPQLL NSNPRAQFEV ASCSTSQDQF MGNLHQTQST INNQHMNGLA
501: LGPSQSSTSG YQNINPSSVH QADLNHLEDW SNPRERGPDD FFSEEEIRLR SHEMLESEDM QQFLRLFSMG GGGNGSATHL PEDGYTFPSF LHTPMQGYDE
601: DRGRSGRAVV GWLKIKAAMR WGFFIRRKAA ERRAQIVELD DDDEDGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)