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AT5G57530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15610358 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 12 (XTH12); CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 13 (TAIR:AT5G57540.1); Has 2233 Blast hits to 2211 proteins in 307 species: Archae - 0; Bacteria - 290; Metazoa - 0; Fungi - 455; Plants - 1386; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G57530-MONOMERBRENDA:2.4.1.207CAZy:GH16EC:2.4.1.207eggNOG:COG2273eggNOG:ENOG410IFD4EMBL:AB011482
EMBL:AY057625EMBL:AY113025EMBL:CP002688EnsemblPlants:AT5G57530EnsemblPlants:AT5G57530.1entrez:835857Gene3D:2.60.120.200
GeneID:835857Genevisible:Q9FKL9GO:GO:0004553GO:GO:0005618GO:GO:0005737GO:GO:0010411GO:GO:0016762
GO:GO:0042546GO:GO:0048046GO:GO:0071555GO:GO:0080039Gramene:AT5G57530.1hmmpanther:PTHR31062hmmpanther:PTHR31062:SF20
HOGENOM:HOG000236368InParanoid:Q9FKL9InterPro:IPR000757InterPro:IPR008263InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455
KEGG:ath:AT5G57530KO:K08235OMA:ECAFANIPaxDb:Q9FKL9Pfam:PF00722Pfam:PF06955Pfam:Q9FKL9
Pfscan:PS51762PhylomeDB:Q9FKL9PIRSF:PIRSF005604PRIDE:Q9FKL9PRO:PR:Q9FKL9PROSITE:PS01034PROSITE:PS51762
ProteinModelPortal:Q9FKL9Proteomes:UP000006548RefSeq:NP_200561.1scanprosite:PS01034SMR:Q9FKL9STRING:3702.AT5G57530.1SUPFAM:SSF49899
TAIR:AT5G57530tair10-symbols:AtXTH12tair10-symbols:XTH12TMHMM:TMhelixUniGene:At.26243UniProt:Q9FKL9
Coordinates (TAIR10) chr5:-:23300469..23301549
Molecular Weight (calculated) 32192.00 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.23
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAFATKQSP LLLASLLILI GVATGSFYDS FDITWGAGRA NIFESGQLLT CTLDKTSGSG FQSKKEYLFG KIDMKIKLVP GNSAGTVTAY YLSSKGETWD
101: EIDFEFLGNV TGQPYVIHTN VFTGGKGNRE MQFYLWFDPT ADFHTYTVLW NPLNIIFLVD GIPIRVFKNN EANGVAYPKS QPMKIYSSLW EADDWATQGG
201: KVKTDWTNAP FSASYRSFND VDCCSRTSIW NWVTCNANSN SWMWTTLNSN QLGQLKWVQK DYMIYNYCTD FKRFPQGLPT ECNLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)