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AT5G57520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : zinc finger protein 2
Curator
Summary (TAIR10)
Encodes a zinc finger protein containing only a single zinc finger.
Computational
Description (TAIR10)
zinc finger protein 2 (ZFP2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 7 (TAIR:AT1G24625.1); Has 1032 Blast hits to 1032 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1032; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4IBeggNOG:ENOG410Z8CNEMBL:BT024687EnsemblPlants:AT5G57520
EnsemblPlants:AT5G57520.1entrez:835856ExpressionAtlas:Q29Q69GeneID:835856
GO:GO:0046872Gramene:AT5G57520.1InterPro:IPR007087KEGG:ath:AT5G57520
OMA:PYPFSGRPaxDb:Q29Q69Pfam:Q39261Pfscan:PS50157
PhylomeDB:Q29Q69PRIDE:Q29Q69PROSITE:PS00028PROSITE:PS50157
ProteinModelPortal:Q29Q69RefSeq:NP_200560.1scanprosite:PS00028SMR:Q29Q69
STRING:3702.AT5G57520.1SUPFAM:SSF57667TAIR:AT5G57520tair10-symbols:ATZFP2
tair10-symbols:ZFP2UniGene:At.1641UniProt:Q29Q69UniProt:Q39261
Coordinates (TAIR10) chr5:+:23296019..23296471
Molecular Weight (calculated) 16956.60 Da
IEP (calculated) 8.46
GRAVY (calculated) -0.86
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYQPNTSLR LSLPSYKNHQ LNLELVLEPS SMSSSSSSST NSSSCLEQPR VFSCNYCQRK FYSSQALGGH QNAHKLERTL AKKSRELFRS SNTVDSDQPY
101: PFSGRFELYG RGYQGFLESG GSRDFSARRV PESGLDQDQE KSHLDLSLRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)