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AT5G57390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AINTEGUMENTA-like 5
Curator
Summary (TAIR10)
Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.essential for the developmental transition between the embryonic and vegetative phases in plants.Overexpression results in the formation of somatic embryos on cotyledons.
Computational
Description (TAIR10)
AINTEGUMENTA-like 5 (AIL5); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G20840.1); Has 9099 Blast hits to 5771 proteins in 325 species: Archae - 0; Bacteria - 38; Metazoa - 238; Fungi - 101; Plants - 7378; Viruses - 6; Other Eukaryotes - 1338 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIG4eggNOG:ENOG410Y90AEMBL:AB016891EMBL:AY585685EMBL:CP002688EnsemblPlants:AT5G57390EnsemblPlants:AT5G57390.1
entrez:835845Gene3D:3.30.730.10GeneID:835845Genevisible:Q6PQQ3GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009791GO:GO:0009845GO:GO:0009873GO:GO:0040019GO:GO:0048364GO:GO:0060771
GO:GO:0060772GO:GO:0060774Gramene:AT5G57390.1hmmpanther:PTHR32467hmmpanther:PTHR32467:SF23HOGENOM:HOG000239258InParanoid:Q6PQQ3
InterPro:IPR001471InterPro:IPR016177InterPro:IPR031112KEGG:ath:AT5G57390KO:K09285OMA:GGNINWIPANTHER:PTHR32467
PaxDb:Q6PQQ3Pfam:PF00847Pfam:Q6PQQ3Pfscan:PS51032PhylomeDB:Q6PQQ3PRINTS:PR00367PRO:PR:Q6PQQ3
PROSITE:PS51032ProteinModelPortal:Q6PQQ3Proteomes:UP000006548RefSeq:NP_200549.2SMART:SM00380SMR:Q6PQQ3STRING:3702.AT5G57390.1
SUPFAM:SSF54171TAIR:AT5G57390tair10-symbols:AIL5tair10-symbols:CHO1tair10-symbols:EMKUniGene:At.29336UniProt:Q6PQQ3
Coordinates (TAIR10) chr5:-:23253459..23256437
Molecular Weight (calculated) 60309.30 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.64
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNNNNKSSS SSSYDSSLSP SSSSSSHQNW LSFSLSNNNN NFNSSSNPNL TSSTSDHHHP HPSHLSLFQA FSTSPVERQD GSPGVSPSDA TAVLSVYPGG
101: PKLENFLGGG ASTTTTRPMQ QVQSLGGVVF SSDLQPPLHP PSAAEIYDSE LKSIAASFLG NYSGGHSSEV SSVHKQQPNP LAVSEASPTP KKNVESFGQR
201: TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEDKAAR AYDLAALKYW GPTTTTNFPI SNYESELEEM KHMTRQEFVA SLRRKSSGFS
301: RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDISRYDVK SIASCNLPVG GLMPKPSPAT AAADKTVDLS
401: PSDSPSLTTP SLTFNVATPV NDHGGTFYHT GIPIKPDPAD HYWSNIFGFQ ANPKAEMRPL ANFGSDLHNP SPGYAIMPVM QEGENNFGGS FVGSDGYNNH
501: SAASNPVSAI PLSSTTTMSN GNEGYGGNIN WINNNISSSY QTAKSNLSVL HTPVFGLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)