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AT5G57345.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:29967049 (2018): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZZ9eggNOG:ENOG410YJ54EMBL:AY087890EMBL:BT025543
EMBL:CP002688EnsemblPlants:AT5G57345EnsemblPlants:AT5G57345.1entrez:835840
GeneID:835840GO:GO:0016021Gramene:AT5G57345.1hmmpanther:PTHR37768
HOGENOM:HOG000242047InterPro:IPR010903KEGG:ath:AT5G57345OMA:ICCKSSH
Pfam:PF07466PhylomeDB:Q8LAD4Proteomes:UP000006548RefSeq:NP_568854.1
STRING:3702.AT5G57345.1TAIR:AT5G57345TMHMM:TMhelixUniGene:At.43745
UniProt:Q8LAD4
Coordinates (TAIR10) chr5:-:23229562..23230587
Molecular Weight (calculated) 20190.60 Da
IEP (calculated) 9.39
GRAVY (calculated) -0.24
Length 188 amino acids
Sequence (TAIR10)
(BLAST)
001: MYFAAIASSR QSFLSNNFSF QHSFKPKSNV NLTRPNSICC KSSHHDDETD SSRKNENQLA KLAIATLAVG VLALGSVGDA FAAKSGGRIG GQAFRSSAPR
101: PPPRINNRSR TNIYVNPQVA PPLIGGYGYG YGGYGWSPFS FFAPGPAVAV GVGGGFDLLL LFMFFGAASA VARNFFRSRN DEDDEDDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)