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AT5G57200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.658
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ENTH/ANTH/VHS superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: N-terminal protein myristoylation, clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT4G25940.1); Has 13426 Blast hits to 6658 proteins in 473 species: Archae - 43; Bacteria - 452; Metazoa - 5386; Fungi - 950; Plants - 797; Viruses - 658; Other Eukaryotes - 5140 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ90eggNOG:KOG0251EMBL:AB019233EMBL:CP002688
EnsemblPlants:AT5G57200EnsemblPlants:AT5G57200.1entrez:835826Gene3D:1.20.58.150
Gene3D:1.25.40.90GeneID:835826Genevisible:Q9LVD8GO:GO:0005545
GO:GO:0005794GO:GO:0005905GO:GO:0006897GO:GO:0030136
GO:GO:0048268Gramene:AT5G57200.1hmmpanther:PTHR22951hmmpanther:PTHR22951:SF17
HOGENOM:HOG000238535InParanoid:Q9LVD8InterPro:IPR008942InterPro:IPR011417
InterPro:IPR013809InterPro:IPR014712iPTMnet:Q9LVD8KEGG:ath:AT5G57200
ncoils:CoilOMA:LEYTQREPaxDb:Q9LVD8Pfam:PF07651
Pfam:Q9LVD8Pfscan:PS50942PhylomeDB:Q9LVD8PRIDE:Q9LVD8
PRO:PR:Q9LVD8PROSITE:PS50942ProteinModelPortal:Q9LVD8Proteomes:UP000006548
RefSeq:NP_200530.1SMART:SM00273SMR:Q9LVD8STRING:3702.AT5G57200.1
SUPFAM:SSF48464SUPFAM:SSF89009TAIR:AT5G57200UniGene:At.55600
UniProt:Q9LVD8
Coordinates (TAIR10) chr5:+:23177696..23180601
Molecular Weight (calculated) 66612.30 Da
IEP (calculated) 4.72
GRAVY (calculated) -0.59
Length 591 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)