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AT5G57060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.437
plasma membrane 0.330
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3PMeggNOG:ENOG410YZAJEMBL:AK229507EMBL:BT008559EMBL:BT008672EMBL:CP002688EnsemblPlants:AT5G57060
EnsemblPlants:AT5G57060.1entrez:835810ExpressionAtlas:Q7X6A8GeneID:835810GO:GO:0016021GO:GO:0019835GO:GO:0050829
Gramene:AT5G57060.1hmmpanther:PTHR10052hmmpanther:PTHR10052:SF11InterPro:IPR000293KEGG:ath:AT5G57060OMA:FAFRWFYPhylomeDB:Q7X6A8
ProDom:PD002657Proteomes:UP000006548RefSeq:NP_568847.1TAIR:AT5G57060TMHMM:TMhelixUniGene:At.29350UniProt:Q7X6A8
Coordinates (TAIR10) chr5:+:23090666..23091796
Molecular Weight (calculated) 15844.30 Da
IEP (calculated) 9.79
GRAVY (calculated) -0.02
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MDENSKFVSG NGRTELVKFI ADRHAKLMKQ ASRHYSAIKD AMARGKKRYT LVKDVDDMET GAYDKPLPCF GCGIGWFSFL LGFMFPFLWY YAAFLYFGNY
101: YRKDPRERAG LAASAITAMG FSLVLLVIFA FRWFYYP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)