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AT5G57030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:23851315 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lycopene beta/epsilon cyclase protein
Curator
Summary (TAIR10)
Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase
Computational
Description (TAIR10)
LUTEIN DEFICIENT 2 (LUT2); CONTAINS InterPro DOMAIN/s: Lycopene beta/epsilon cyclase (InterPro:IPR008671), Lycopene cyclase, beta/epsilon (InterPro:IPR010108); BEST Arabidopsis thaliana protein match is: lycopene cyclase (TAIR:AT3G10230.1); Has 1086 Blast hits to 1081 proteins in 157 species: Archae - 2; Bacteria - 176; Metazoa - 0; Fungi - 0; Plants - 363; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G57030-MONOMERBioCyc:MetaCyc:AT5G57030-MONOMERBRENDA:5.5.1.18EC:5.5.1.18eggNOG:ENOG410II56eggNOG:ENOG410XPIYEMBL:AB024035
EMBL:AF117257EMBL:AY040024EMBL:AY079371EMBL:CP002688EMBL:U50738EnsemblPlants:AT5G57030EnsemblPlants:AT5G57030.1
entrez:835806Gene3D:3.50.50.60GeneID:835806Genevisible:Q38932GO:GO:0004497GO:GO:0016021GO:GO:0016117
GO:GO:0016123GO:GO:0016705GO:GO:0031969GO:GO:0044550GO:GO:0045435Gramene:AT5G57030.1gramene_pathway:5.5.1.-
gramene_pathway:PWY-5946hmmpanther:PTHR13789hmmpanther:PTHR13789:SF207HOGENOM:HOG000224851InParanoid:Q38932InterPro:IPR010108InterPro:IPR023753
KEGG:ath:AT5G57030KO:K06444OMA:HVWRDTIPaxDb:Q38932Pfam:PF05834Pfam:Q38932PhylomeDB:Q38932
PRIDE:Q38932PRO:PR:Q38932ProteinModelPortal:Q38932Proteomes:UP000006548RefSeq:NP_200513.1SMR:Q38932STRING:3702.AT5G57030.1
SUPFAM:SSF51905TAIR:AT5G57030tair10-symbols:LUT2TIGRfam:TIGR01790TIGRFAMs:TIGR01790TMHMM:TMhelixUniGene:At.7099
UniPathway:UPA00801UniPathway:UPA00804UniProt:Q38932
Coordinates (TAIR10) chr5:+:23077398..23079818
Molecular Weight (calculated) 58494.40 Da
IEP (calculated) 5.64
GRAVY (calculated) -0.09
Length 524 amino acids
Sequence (TAIR10)
(BLAST)
001: MECVGARNFA AMAVSTFPSW SCRRKFPVVK RYSYRNIRFG LCSVRASGGG SSGSESCVAV REDFADEEDF VKAGGSEILF VQMQQNKDMD EQSKLVDKLP
101: PISIGDGALD LVVIGCGPAG LALAAESAKL GLKVGLIGPD LPFTNNYGVW EDEFNDLGLQ KCIEHVWRET IVYLDDDKPI TIGRAYGRVS RRLLHEELLR
201: RCVESGVSYL SSKVDSITEA SDGLRLVACD DNNVIPCRLA TVASGAASGK LLQYEVGGPR VCVQTAYGVE VEVENSPYDP DQMVFMDYRD YTNEKVRSLE
301: AEYPTFLYAM PMTKSRLFFE ETCLASKDVM PFDLLKTKLM LRLDTLGIRI LKTYEEEWSY IPVGGSLPNT EQKNLAFGAA ASMVHPATGY SVVRSLSEAP
401: KYASVIAEIL REETTKQINS NISRQAWDTL WPPERKRQRA FFLFGLALIV QFDTEGIRSF FRTFFRLPKW MWQGFLGSTL TSGDLVLFAL YMFVISPNNL
501: RKGLINHLIS DPTGATMIKT YLKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)