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AT5G56970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27322763 (2016): plasma membrane
  • PMID:14555694 (2003): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytokinin oxidase 3
Curator
Summary (TAIR10)
It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational
Description (TAIR10)
cytokinin oxidase 3 (CKX3); FUNCTIONS IN: primary amine oxidase activity, cytokinin dehydrogenase activity; INVOLVED IN: cytokinin catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase 4 (TAIR:AT4G29740.2); Has 7950 Blast hits to 7944 proteins in 1387 species: Archae - 176; Bacteria - 4485; Metazoa - 150; Fungi - 1601; Plants - 789; Viruses - 0; Other Eukaryotes - 749 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G56970-MONOMERBioCyc:MetaCyc:AT5G56970-MONOMERBioGrid:21043BRENDA:1.5.99.12EC:1.5.99.12eggNOG:COG0277eggNOG:KOG1231
EMBL:AB024035EMBL:AF303979EMBL:CP002688EnsemblPlants:AT5G56970EnsemblPlants:AT5G56970.1entrez:835799ExpressionAtlas:Q9LTS3
Gene3D:3.30.43.10Gene3D:3.30.465.10Gene3D:3.40.462.10GeneID:835799Genevisible:Q9LTS3GO:GO:0005773GO:GO:0005783
GO:GO:0008131GO:GO:0009823GO:GO:0016614GO:GO:0019139GO:GO:0050660Gramene:AT5G56970.1gramene_pathway:1.5.99.12
gramene_pathway:PWY-2841hmmpanther:PTHR13878hmmpanther:PTHR13878:SF14HOGENOM:HOG000237593InParanoid:Q9LTS3InterPro:IPR006093InterPro:IPR006094
InterPro:IPR015345InterPro:IPR016164InterPro:IPR016166InterPro:IPR016167InterPro:IPR016169InterPro:IPR016170iPTMnet:Q9LTS3
KEGG:ath:AT5G56970KO:K00279MINT:MINT-8062989OMA:IGSWRSQPaxDb:Q9LTS3Pfam:PF01565Pfam:PF09265
Pfam:Q9LTS3Pfscan:PS51387PhylomeDB:Q9LTS3PRIDE:Q9LTS3PRO:PR:Q9LTS3PROSITE:PS00862PROSITE:PS51387
ProteinModelPortal:Q9LTS3Proteomes:UP000006548RefSeq:NP_200507.1SABIO-RK:Q9LTS3scanprosite:PS00862SMR:Q9LTS3STRING:3702.AT5G56970.1
SUPFAM:SSF55103SUPFAM:SSF56176TAIR:AT5G56970tair10-symbols:ATCKX3tair10-symbols:CKX3TMHMM:TMhelixUniGene:At.7094
UniProt:B3DNN3UniProt:Q9LTS3
Coordinates (TAIR10) chr5:-:23044944..23048245
Molecular Weight (calculated) 59426.00 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.23
Length 523 amino acids
Sequence (TAIR10)
(BLAST)
001: MASYNLRSQV RLIAITIVII ITLSTPITTN TSPQPWNILS HNEFAGKLTS SSSSVESAAT DFGHVTKIFP SAVLIPSSVE DITDLIKLSF DSQLSFPLAA
101: RGHGHSHRGQ ASAKDGVVVN MRSMVNRDRG IKVSRTCLYV DVDAAWLWIE VLNKTLELGL TPVSWTDYLY LTVGGTLSNG GISGQTFRYG PQITNVLEMD
201: VITGKGEIAT CSKDMNSDLF FAVLGGLGQF GIITRARIKL EVAPKRAKWL RFLYIDFSEF TRDQERVISK TDGVDFLEGS IMVDHGPPDN WRSTYYPPSD
301: HLRIASMVKR HRVIYCLEVV KYYDETSQYT VNEEMEELSD SLNHVRGFMY EKDVTYMDFL NRVRTGELNL KSKGQWDVPH PWLNLFVPKT QISKFDDGVF
401: KGIILRNNIT SGPVLVYPMN RNKWNDRMSA AIPEEDVFYA VGFLRSAGFD NWEAFDQENM EILKFCEDAN MGVIQYLPYH SSQEGWVRHF GPRWNIFVER
501: KYKYDPKMIL SPGQNIFQKI NSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)