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AT5G56860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA type zinc finger transcription factor family protein
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA, nitrate-inducible, carbon metabolism-involved (GNC); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: cytokinin-responsive gata factor 1 (TAIR:AT4G26150.1); Has 1952 Blast hits to 1890 proteins in 209 species: Archae - 0; Bacteria - 2; Metazoa - 234; Fungi - 682; Plants - 707; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:BT025970EnsemblPlants:AT5G56860EnsemblPlants:AT5G56860.1entrez:835788ExpressionAtlas:Q1EBW4
Gene3D:3.30.50.10GeneID:835788GO:GO:0003700GO:GO:0008270GO:GO:0043565Gramene:AT5G56860.1hmmpanther:PTHR10071
hmmpanther:PTHR10071:SF191InterPro:IPR000679InterPro:IPR013088KEGG:ath:AT5G56860OMA:HVAYNNTPaxDb:Q1EBW4Pfam:PF00320
Pfam:Q5HZ36Pfscan:PS50114PhylomeDB:Q1EBW4PRIDE:Q1EBW4PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:Q1EBW4
ProteinModelPortal:Q5HZ36RefSeq:NP_200497.1scanprosite:PS00344SMART:SM00401SMR:Q1EBW4STRING:3702.AT5G56860.1SUPFAM:SSF57716
TAIR:AT5G56860tair10-symbols:GATA21tair10-symbols:GNCUniGene:At.28597UniGene:At.69367UniProt:Q1EBW4UniProt:Q5HZ36
Coordinates (TAIR10) chr5:-:22989630..22991351
Molecular Weight (calculated) 44842.30 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.96
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)