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AT5G56610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.983
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphotyrosine protein phosphatases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G35680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G56610-MONOMEReggNOG:ENOG4111IMReggNOG:KOG1719EMBL:AK221735EMBL:BT012631EMBL:CP002688EMBL:FJ605096
EnsemblPlants:AT5G56610EnsemblPlants:AT5G56610.1entrez:835762ExpressionAtlas:Q6NKR2Gene3D:3.90.190.10GeneID:835762GO:GO:0004725
GO:GO:0008138Gramene:AT5G56610.1hmmpanther:PTHR10159hmmpanther:PTHR10159:SF358HOGENOM:HOG000238257InterPro:IPR000340InterPro:IPR000387
InterPro:IPR016130InterPro:IPR020422InterPro:IPR024950InterPro:IPR029021OMA:AYEMEHLPANTHER:PTHR10159Pfam:PF00782
Pfscan:PS50054Pfscan:PS50056PhylomeDB:Q6NKR2PROSITE:PS00383PROSITE:PS50054PROSITE:PS50056Proteomes:UP000006548
RefSeq:NP_200472.2scanprosite:PS00383SMART:SM00195SMR:Q6NKR2STRING:3702.AT5G56610.1SUPFAM:SSF52799TAIR:AT5G56610
UniGene:At.50717UniProt:Q6NKR2
Coordinates (TAIR10) chr5:+:22916738..22918137
Molecular Weight (calculated) 25727.10 Da
IEP (calculated) 9.77
GRAVY (calculated) -0.23
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MTDETEEDDT TQQRSSRNDG VSKNKGKGFK GDKAKRALIG AGGRILFYPT LLYNLVRFKL QSQFRWWDQI DEYLLMGAVP FRKDVPRLKK LGVGGVITLN
101: EPYETLVPSS LYSAYEMEHL VIPTRDYLFA PSIVDITLAV NFIHKNALLG KTTYVHCKAG RGRSTTVVLC YLIEHKSMTV AAAFEHVRSI RPRVLLHPSQ
201: RKVVEEFSRL QSPLSESTFI ATSGDIVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)