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AT5G56500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TCP-1/cpn60 chaperonin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, protein refolding, cellular protein metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34404 Blast hits to 34375 proteins in 8725 species: Archae - 780; Bacteria - 22076; Metazoa - 1687; Fungi - 1649; Plants - 826; Viruses - 2; Other Eukaryotes - 7384 (source: NCBI BLink).
Protein Annotations
BioGrid:20995eggNOG:COG0459eggNOG:KOG0356EMBL:AB009049EMBL:AB019234EMBL:AK228340EMBL:AK319025
EMBL:CP002688EnsemblPlants:AT5G56500EnsemblPlants:AT5G56500.1EnsemblPlants:AT5G56500.2entrez:835751Gene3D:1.10.560.10Gene3D:3.50.7.10
GeneID:835751Genevisible:C0Z361GO:GO:0005524GO:GO:0009507GO:GO:0042026Gramene:AT5G56500.1Gramene:AT5G56500.2
HAMAP:MF_00600hmmpanther:PTHR11353hmmpanther:PTHR11353:SF8HOGENOM:HOG000076290InParanoid:C0Z361InterPro:IPR001844InterPro:IPR002423
InterPro:IPR018370InterPro:IPR027409InterPro:IPR027413iPTMnet:C0Z361KEGG:ath:AT5G56500KO:K04077ncoils:Coil
OMA:PRICAMAPaxDb:C0Z361Pfam:C0Z361Pfam:PF00118PhylomeDB:C0Z361PRIDE:C0Z361PRINTS:PR00298
PRO:PR:C0Z361ProMEX:C0Z361PROSITE:PS00296ProteinModelPortal:C0Z361Proteomes:UP000006548RefSeq:NP_001032083.1RefSeq:NP_200461.4
scanprosite:PS00296SMR:C0Z361STRING:3702.AT5G56500.1SUPFAM:SSF48592SUPFAM:SSF52029SUPFAM:SSF54849TAIR:AT5G56500
TIGRfam:TIGR02348TIGRFAMs:TIGR02348UniGene:At.43152UniProt:C0Z361
Coordinates (TAIR10) chr5:+:22874058..22876966
Molecular Weight (calculated) 63328.10 Da
IEP (calculated) 5.57
GRAVY (calculated) -0.10
Length 597 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTFSATSS MGSSLAPPSN RLSSFVSISS SSFGRTQSIA QRKARFPKIY AAKQLHFNKD GTAIKKLQAG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAS KTNDLAGDGT TTSVVLAQGL IAEGVKVVAA GANPVLITRG IEKTTKALVA ELKKMSKEVE DSELADVAAV
201: SAGNNYEVGN MIAEAMAKVG RKGVVTLEEG KSAENSLYVV EGMQFDRGYI SPYFVTDSEK MCAEYENCKL FLVDKKITNA RDIISILEDA IKGGYPLLII
301: AEDIEQEPLA TLVVNKLRGT IKVAALKAPG FGERKSQYLD DIAALTGATV IREEVGLQLE KVGPEVLGNA GKVVLTKDTT TIVGDGSTEE VVKKRVEQIK
401: NLIEAAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK ETLANDEEKV GADIVKKALS
501: YPLKLIAKNA GVNGSVVSEK VLSSDNPKHG YNAATGKYED LMAAGIIDPT KVVRCCLEHA SSVAKTFLMS DCVVVEIKEP ESAAPAGNPM DNSGYGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)