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AT5G56450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial substrate carrier family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 1 (TAIR:AT3G08580.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNW0eggNOG:KOG0749EMBL:AB009049EMBL:AY084555
EMBL:BT025880EMBL:CP002688EnsemblPlants:AT5G56450EnsemblPlants:AT5G56450.1
entrez:835746Gene3D:1.50.40.10GeneID:835746Genevisible:Q9FM86
GO:GO:0003735GO:GO:0005347GO:GO:0005743GO:GO:0006412
GO:GO:0015867GO:GO:0016021GO:GO:0048653Gramene:AT5G56450.1
hmmpanther:PTHR24089hmmpanther:PTHR24089:SF342HOGENOM:HOG000165727InParanoid:Q9FM86
InterPro:IPR002067InterPro:IPR002113InterPro:IPR018108InterPro:IPR023395
KEGG:ath:AT5G56450KO:K05863OMA:MCISKEDPaxDb:Q9FM86
Pfam:PF00153Pfam:Q9FM86Pfscan:PS50920PhylomeDB:Q9FM86
PRIDE:Q9FM86PRINTS:PR00926PRINTS:PR00927PRO:PR:Q9FM86
PROSITE:PS50920ProteinModelPortal:Q9FM86Proteomes:UP000006548Reactome:R-ATH-422356
RefSeq:NP_200456.1SMR:Q9FM86STRING:3702.AT5G56450.1SUPFAM:0048588
SUPFAM:SSF103506TAIR:AT5G56450UniGene:At.29385UniProt:Q9FM86
Coordinates (TAIR10) chr5:-:22858772..22859764
Molecular Weight (calculated) 36933.60 Da
IEP (calculated) 10.17
GRAVY (calculated) -0.17
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MCISKEDEED PSRNRRNQSP LSLPQTLKHF QKDLLAGAVM GGVVHTIVAP IERAKLLLQT QESNIAIVGD EGHAGKRRFK GMFDFIFRTV REEGVLSLWR
101: GNGSSVLRYY PSVALNFSLK DLYRSILRNS SSQENHIFSG ALANFMAGSA AGCTALIVVY PLDIAHTRLA ADIGKPEARQ FRGIHHFLST IHKKDGVRGI
201: YRGLPASLHG VIIHRGLYFG GFDTVKEIFS EDTKPELALW KRWGLAQAVT TSAGLASYPL DTVRRRIMMQ SGMEHPMYRS TLDCWKKIYR SEGLASFYRG
301: ALSNMFRSTG SAAILVFYDE VKRFLNWGGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)