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AT5G56310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20974eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB009049
EMBL:AK229016EMBL:CP002688EnsemblPlants:AT5G56310EnsemblPlants:AT5G56310.1
entrez:835730Gene3D:1.25.40.10GeneID:835730Genevisible:Q9FMA1
Gramene:AT5G56310.1hmmpanther:PTHR24015HOGENOM:HOG000237569InParanoid:Q9FMA1
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT5G56310OMA:MLMENVE
PaxDb:Q9FMA1Pfam:PF01535Pfam:PF13041Pfam:Q9FMA1
Pfscan:PS51375PhylomeDB:Q9FMA1PRIDE:Q9FMA1PRO:PR:Q9FMA1
PROSITE:PS51375ProteinModelPortal:Q9FMA1Proteomes:UP000006548RefSeq:NP_200442.1
SMR:Q9FMA1STRING:3702.AT5G56310.1SUPFAM:SSF48452TAIR:AT5G56310
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.70454UniProt:Q9FMA1
Coordinates (TAIR10) chr5:+:22802322..22803914
Molecular Weight (calculated) 59194.00 Da
IEP (calculated) 7.57
GRAVY (calculated) 0.02
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MIQRINALSL SSGLNWFVTS LKIHGNNLKT LKQSHCYMII TGLNRDNLNV AKFIEACSNA GHLRYAYSVF THQPCPNTYL HNTMIRALSL LDEPNAHSIA
101: ITVYRKLWAL CAKPDTFTFP FVLKIAVRVS DVWFGRQIHG QVVVFGFDSS VHVVTGLIQM YFSCGGLGDA RKMFDEMLVK DVNVWNALLA GYGKVGEMDE
201: ARSLLEMMPC WVRNEVSWTC VISGYAKSGR ASEAIEVFQR MLMENVEPDE VTLLAVLSAC ADLGSLELGE RICSYVDHRG MNRAVSLNNA VIDMYAKSGN
301: ITKALDVFEC VNERNVVTWT TIIAGLATHG HGAEALAMFN RMVKAGVRPN DVTFIAILSA CSHVGWVDLG KRLFNSMRSK YGIHPNIEHY GCMIDLLGRA
401: GKLREADEVI KSMPFKANAA IWGSLLAASN VHHDLELGER ALSELIKLEP NNSGNYMLLA NLYSNLGRWD ESRMMRNMMK GIGVKKMAGE SSIEVENRVY
501: KFISGDLTHP QVERIHEILQ EMDLQIQSKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)