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AT5G56280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : COP9 signalosome subunit 6A
Curator
Summary (TAIR10)
one of two genes encoding subunit 6 of COP9 signalosome complex. Protein contains a MPR1p and PAD1p N-terminal (MPN) domain at the N-terminal region and belongs to the Mov34 superfamily. Mutant and antisense expression result in a number of developmental defects and in ubiquitin/proteasome-mediated protein degradation.
Computational
Description (TAIR10)
COP9 signalosome subunit 6A (CSN6A); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome subunit 6B (TAIR:AT4G26430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20971eggNOG:COG1310eggNOG:KOG3050EMBL:AB026656EMBL:AF395063EMBL:AY048692EMBL:BT004034
EMBL:CP002688EnsemblPlants:AT5G56280EnsemblPlants:AT5G56280.1entrez:835727ExpressionAtlas:Q8W206GeneID:835727Genevisible:Q8W206
GO:GO:0005634GO:GO:0005737GO:GO:0006511GO:GO:0007275GO:GO:0008180GO:GO:0009585GO:GO:0010387
GO:GO:0010388GO:GO:0030163Gramene:AT5G56280.1hmmpanther:PTHR10540hmmpanther:PTHR10540:SF8HOGENOM:HOG000253002InParanoid:Q8W206
IntAct:Q8W206InterPro:IPR000555InterPro:IPR024969KEGG:ath:AT5G56280KO:K12179OMA:DFLGWYTPaxDb:Q8W206
Pfam:PF01398Pfam:PF13012Pfam:Q8W206PhylomeDB:Q8W206PRIDE:Q8W206PRO:PR:Q8W206ProteinModelPortal:Q8W206
Proteomes:UP000006548Reactome:R-ATH-5696394Reactome:R-ATH-6781823RefSeq:NP_568839.1SMART:SM00232SMR:Q8W206STRING:3702.AT5G56280.1
TAIR:AT5G56280tair10-symbols:CSN6AUniGene:At.20191UniProt:Q1EC57UniProt:Q8W206
Coordinates (TAIR10) chr5:-:22783617..22785530
Molecular Weight (calculated) 35660.60 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.28
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)